Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3791 and HP15_3792 are separated by 318 nucleotides HP15_3792 and HP15_3793 are separated by 142 nucleotides
HP15_3791: HP15_3791 - lipase/esterase, at 4,012,780 to 4,013,655
_3791
HP15_3792: HP15_3792 - D-(-)-3-hydroxybutyrate oligomer hydrolase precursor, at 4,013,974 to 4,016,151
_3792
HP15_3793: HP15_3793 - protein containing RNA polymerase sigma factor 54, interaction / helix-turn-helix, Fis-type, at 4,016,294 to 4,017,706
_3793
Position (kb)
4013
4014
4015
4016
4017 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4013.091 kb on - strand, within HP15_3791 at 4013.306 kb on + strand, within HP15_3791 at 4013.362 kb on - strand, within HP15_3791 at 4013.364 kb on - strand, within HP15_3791 at 4013.429 kb on + strand, within HP15_3791 at 4013.472 kb on - strand, within HP15_3791 at 4013.563 kb on + strand, within HP15_3791 at 4013.615 kb on - strand at 4013.658 kb on - strand at 4013.720 kb on - strand at 4013.785 kb on - strand at 4013.877 kb on + strand at 4013.885 kb on - strand at 4013.885 kb on - strand at 4014.010 kb on + strand at 4014.061 kb on - strand at 4014.080 kb on - strand at 4014.085 kb on + strand at 4014.085 kb on + strand at 4014.152 kb on + strand at 4014.162 kb on + strand at 4014.217 kb on + strand, within HP15_3792 at 4014.225 kb on - strand, within HP15_3792 at 4014.239 kb on - strand, within HP15_3792 at 4014.252 kb on + strand, within HP15_3792 at 4014.262 kb on - strand, within HP15_3792 at 4014.315 kb on + strand, within HP15_3792 at 4014.323 kb on - strand, within HP15_3792 at 4014.350 kb on + strand, within HP15_3792 at 4014.363 kb on + strand, within HP15_3792 at 4014.363 kb on + strand, within HP15_3792 at 4014.371 kb on - strand, within HP15_3792 at 4014.371 kb on - strand, within HP15_3792 at 4014.371 kb on - strand, within HP15_3792 at 4014.385 kb on - strand, within HP15_3792 at 4014.385 kb on - strand, within HP15_3792 at 4014.387 kb on + strand, within HP15_3792 at 4014.387 kb on + strand, within HP15_3792 at 4014.395 kb on - strand, within HP15_3792 at 4014.409 kb on + strand, within HP15_3792 at 4014.423 kb on + strand, within HP15_3792 at 4014.481 kb on + strand, within HP15_3792 at 4014.489 kb on - strand, within HP15_3792 at 4014.580 kb on + strand, within HP15_3792 at 4014.580 kb on + strand, within HP15_3792 at 4014.580 kb on + strand, within HP15_3792 at 4014.580 kb on + strand, within HP15_3792 at 4014.582 kb on + strand, within HP15_3792 at 4014.622 kb on - strand, within HP15_3792 at 4014.637 kb on + strand, within HP15_3792 at 4014.679 kb on + strand, within HP15_3792 at 4014.687 kb on - strand, within HP15_3792 at 4014.692 kb on - strand, within HP15_3792 at 4014.718 kb on + strand, within HP15_3792 at 4014.765 kb on + strand, within HP15_3792 at 4014.765 kb on + strand, within HP15_3792 at 4014.765 kb on + strand, within HP15_3792 at 4014.773 kb on - strand, within HP15_3792 at 4014.773 kb on - strand, within HP15_3792 at 4014.773 kb on - strand, within HP15_3792 at 4014.773 kb on - strand, within HP15_3792 at 4014.773 kb on - strand, within HP15_3792 at 4014.773 kb on - strand, within HP15_3792 at 4014.802 kb on + strand, within HP15_3792 at 4014.869 kb on - strand, within HP15_3792 at 4014.922 kb on - strand, within HP15_3792 at 4014.922 kb on - strand, within HP15_3792 at 4015.004 kb on - strand, within HP15_3792 at 4015.022 kb on - strand, within HP15_3792 at 4015.047 kb on + strand, within HP15_3792 at 4015.084 kb on - strand, within HP15_3792 at 4015.089 kb on + strand, within HP15_3792 at 4015.089 kb on + strand, within HP15_3792 at 4015.092 kb on - strand, within HP15_3792 at 4015.114 kb on + strand, within HP15_3792 at 4015.119 kb on + strand, within HP15_3792 at 4015.124 kb on + strand, within HP15_3792 at 4015.132 kb on - strand, within HP15_3792 at 4015.230 kb on + strand, within HP15_3792 at 4015.324 kb on + strand, within HP15_3792 at 4015.343 kb on + strand, within HP15_3792 at 4015.396 kb on + strand, within HP15_3792 at 4015.402 kb on - strand, within HP15_3792 at 4015.429 kb on - strand, within HP15_3792 at 4015.529 kb on - strand, within HP15_3792 at 4015.544 kb on + strand, within HP15_3792 at 4015.571 kb on - strand, within HP15_3792 at 4015.606 kb on + strand, within HP15_3792 at 4015.626 kb on - strand, within HP15_3792 at 4015.647 kb on - strand, within HP15_3792 at 4015.703 kb on - strand, within HP15_3792 at 4015.707 kb on + strand, within HP15_3792 at 4015.747 kb on - strand, within HP15_3792 at 4015.828 kb on - strand, within HP15_3792 at 4015.828 kb on - strand, within HP15_3792 at 4015.830 kb on + strand, within HP15_3792 at 4015.911 kb on - strand, within HP15_3792 at 4015.974 kb on + strand at 4016.009 kb on - strand at 4016.032 kb on - strand at 4016.075 kb on - strand at 4016.082 kb on + strand at 4016.133 kb on + strand at 4016.141 kb on - strand at 4016.160 kb on - strand at 4016.250 kb on + strand at 4016.290 kb on + strand at 4016.290 kb on + strand at 4016.290 kb on + strand at 4016.290 kb on + strand at 4016.290 kb on + strand at 4016.290 kb on + strand at 4016.298 kb on - strand at 4016.325 kb on - strand at 4016.327 kb on + strand at 4016.340 kb on - strand at 4016.393 kb on + strand at 4016.413 kb on + strand at 4016.524 kb on + strand, within HP15_3793 at 4016.548 kb on + strand, within HP15_3793 at 4016.561 kb on - strand, within HP15_3793 at 4016.645 kb on - strand, within HP15_3793 at 4016.800 kb on + strand, within HP15_3793 at 4016.879 kb on + strand, within HP15_3793 at 4016.903 kb on + strand, within HP15_3793 at 4016.903 kb on + strand, within HP15_3793 at 4016.911 kb on - strand, within HP15_3793 at 4016.926 kb on + strand, within HP15_3793 at 4016.965 kb on + strand, within HP15_3793
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 4,013,091 - HP15_3791 0.36 -1.5 4,013,306 + HP15_3791 0.60 +0.4 4,013,362 - HP15_3791 0.66 +0.4 4,013,364 - HP15_3791 0.67 -0.8 4,013,429 + HP15_3791 0.74 -0.8 4,013,472 - HP15_3791 0.79 +0.1 4,013,563 + HP15_3791 0.89 +0.3 4,013,615 - +1.4 4,013,658 - +0.1 4,013,720 - +0.0 4,013,785 - +0.2 4,013,877 + -0.0 4,013,885 - -1.9 4,013,885 - +0.6 4,014,010 + +0.3 4,014,061 - +0.9 4,014,080 - +0.2 4,014,085 + -0.1 4,014,085 + -0.7 4,014,152 + -0.7 4,014,162 + +1.0 4,014,217 + HP15_3792 0.11 -1.2 4,014,225 - HP15_3792 0.12 -0.0 4,014,239 - HP15_3792 0.12 +0.1 4,014,252 + HP15_3792 0.13 -0.3 4,014,262 - HP15_3792 0.13 -1.0 4,014,315 + HP15_3792 0.16 +0.1 4,014,323 - HP15_3792 0.16 +0.3 4,014,350 + HP15_3792 0.17 +0.8 4,014,363 + HP15_3792 0.18 -1.1 4,014,363 + HP15_3792 0.18 +0.5 4,014,371 - HP15_3792 0.18 +0.8 4,014,371 - HP15_3792 0.18 -2.6 4,014,371 - HP15_3792 0.18 -1.2 4,014,385 - HP15_3792 0.19 +1.7 4,014,385 - HP15_3792 0.19 +0.6 4,014,387 + HP15_3792 0.19 +1.2 4,014,387 + HP15_3792 0.19 +0.3 4,014,395 - HP15_3792 0.19 -0.2 4,014,409 + HP15_3792 0.20 +0.3 4,014,423 + HP15_3792 0.21 +0.3 4,014,481 + HP15_3792 0.23 -1.0 4,014,489 - HP15_3792 0.24 -3.4 4,014,580 + HP15_3792 0.28 -2.3 4,014,580 + HP15_3792 0.28 +1.3 4,014,580 + HP15_3792 0.28 -1.3 4,014,580 + HP15_3792 0.28 -2.0 4,014,582 + HP15_3792 0.28 +0.7 4,014,622 - HP15_3792 0.30 +0.2 4,014,637 + HP15_3792 0.30 -0.5 4,014,679 + HP15_3792 0.32 +0.2 4,014,687 - HP15_3792 0.33 +1.0 4,014,692 - HP15_3792 0.33 -0.4 4,014,718 + HP15_3792 0.34 +0.9 4,014,765 + HP15_3792 0.36 +0.3 4,014,765 + HP15_3792 0.36 +0.4 4,014,765 + HP15_3792 0.36 -0.1 4,014,773 - HP15_3792 0.37 +0.5 4,014,773 - HP15_3792 0.37 -0.4 4,014,773 - HP15_3792 0.37 +0.2 4,014,773 - HP15_3792 0.37 -0.7 4,014,773 - HP15_3792 0.37 +0.4 4,014,773 - HP15_3792 0.37 +0.0 4,014,802 + HP15_3792 0.38 +0.5 4,014,869 - HP15_3792 0.41 -0.0 4,014,922 - HP15_3792 0.44 +1.7 4,014,922 - HP15_3792 0.44 +0.3 4,015,004 - HP15_3792 0.47 +0.3 4,015,022 - HP15_3792 0.48 +0.8 4,015,047 + HP15_3792 0.49 +0.0 4,015,084 - HP15_3792 0.51 +0.1 4,015,089 + HP15_3792 0.51 +0.4 4,015,089 + HP15_3792 0.51 -0.9 4,015,092 - HP15_3792 0.51 +0.9 4,015,114 + HP15_3792 0.52 +1.5 4,015,119 + HP15_3792 0.53 -0.2 4,015,124 + HP15_3792 0.53 -1.3 4,015,132 - HP15_3792 0.53 +0.8 4,015,230 + HP15_3792 0.58 -0.1 4,015,324 + HP15_3792 0.62 +0.0 4,015,343 + HP15_3792 0.63 -0.2 4,015,396 + HP15_3792 0.65 +0.3 4,015,402 - HP15_3792 0.66 +0.1 4,015,429 - HP15_3792 0.67 -0.9 4,015,529 - HP15_3792 0.71 +0.3 4,015,544 + HP15_3792 0.72 +0.5 4,015,571 - HP15_3792 0.73 +0.1 4,015,606 + HP15_3792 0.75 -0.3 4,015,626 - HP15_3792 0.76 +0.7 4,015,647 - HP15_3792 0.77 +0.1 4,015,703 - HP15_3792 0.79 +0.5 4,015,707 + HP15_3792 0.80 +0.3 4,015,747 - HP15_3792 0.81 +0.9 4,015,828 - HP15_3792 0.85 +0.4 4,015,828 - HP15_3792 0.85 +0.2 4,015,830 + HP15_3792 0.85 +0.5 4,015,911 - HP15_3792 0.89 +0.3 4,015,974 + +0.3 4,016,009 - -2.8 4,016,032 - +0.6 4,016,075 - -0.3 4,016,082 + +1.2 4,016,133 + -2.6 4,016,141 - +0.7 4,016,160 - +0.4 4,016,250 + -0.7 4,016,290 + -0.2 4,016,290 + +2.3 4,016,290 + +0.2 4,016,290 + +0.8 4,016,290 + -0.4 4,016,290 + +0.1 4,016,298 - +0.0 4,016,325 - -0.3 4,016,327 + -0.0 4,016,340 - -0.0 4,016,393 + -1.1 4,016,413 + -1.9 4,016,524 + HP15_3793 0.16 -0.1 4,016,548 + HP15_3793 0.18 -2.3 4,016,561 - HP15_3793 0.19 +0.6 4,016,645 - HP15_3793 0.25 +0.8 4,016,800 + HP15_3793 0.36 -0.5 4,016,879 + HP15_3793 0.41 +0.5 4,016,903 + HP15_3793 0.43 -0.1 4,016,903 + HP15_3793 0.43 +0.2 4,016,911 - HP15_3793 0.44 -1.5 4,016,926 + HP15_3793 0.45 +0.4 4,016,965 + HP15_3793 0.47 +0.1
Or see this region's nucleotide sequence