Strain Fitness in Marinobacter adhaerens HP15 around HP15_3792

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3791 and HP15_3792 are separated by 318 nucleotidesHP15_3792 and HP15_3793 are separated by 142 nucleotides HP15_3791: HP15_3791 - lipase/esterase, at 4,012,780 to 4,013,655 _3791 HP15_3792: HP15_3792 - D-(-)-3-hydroxybutyrate oligomer hydrolase precursor, at 4,013,974 to 4,016,151 _3792 HP15_3793: HP15_3793 - protein containing RNA polymerase sigma factor 54, interaction / helix-turn-helix, Fis-type, at 4,016,294 to 4,017,706 _3793 Position (kb) 4013 4014 4015 4016 4017Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4013.091 kb on - strand, within HP15_3791at 4013.306 kb on + strand, within HP15_3791at 4013.362 kb on - strand, within HP15_3791at 4013.364 kb on - strand, within HP15_3791at 4013.429 kb on + strand, within HP15_3791at 4013.472 kb on - strand, within HP15_3791at 4013.563 kb on + strand, within HP15_3791at 4013.615 kb on - strandat 4013.658 kb on - strandat 4013.720 kb on - strandat 4013.785 kb on - strandat 4013.877 kb on + strandat 4013.885 kb on - strandat 4013.885 kb on - strandat 4014.010 kb on + strandat 4014.061 kb on - strandat 4014.080 kb on - strandat 4014.085 kb on + strandat 4014.085 kb on + strandat 4014.152 kb on + strandat 4014.162 kb on + strandat 4014.217 kb on + strand, within HP15_3792at 4014.225 kb on - strand, within HP15_3792at 4014.239 kb on - strand, within HP15_3792at 4014.252 kb on + strand, within HP15_3792at 4014.262 kb on - strand, within HP15_3792at 4014.315 kb on + strand, within HP15_3792at 4014.323 kb on - strand, within HP15_3792at 4014.350 kb on + strand, within HP15_3792at 4014.363 kb on + strand, within HP15_3792at 4014.363 kb on + strand, within HP15_3792at 4014.371 kb on - strand, within HP15_3792at 4014.371 kb on - strand, within HP15_3792at 4014.371 kb on - strand, within HP15_3792at 4014.385 kb on - strand, within HP15_3792at 4014.385 kb on - strand, within HP15_3792at 4014.387 kb on + strand, within HP15_3792at 4014.387 kb on + strand, within HP15_3792at 4014.395 kb on - strand, within HP15_3792at 4014.409 kb on + strand, within HP15_3792at 4014.423 kb on + strand, within HP15_3792at 4014.481 kb on + strand, within HP15_3792at 4014.489 kb on - strand, within HP15_3792at 4014.580 kb on + strand, within HP15_3792at 4014.580 kb on + strand, within HP15_3792at 4014.580 kb on + strand, within HP15_3792at 4014.580 kb on + strand, within HP15_3792at 4014.582 kb on + strand, within HP15_3792at 4014.622 kb on - strand, within HP15_3792at 4014.637 kb on + strand, within HP15_3792at 4014.679 kb on + strand, within HP15_3792at 4014.687 kb on - strand, within HP15_3792at 4014.692 kb on - strand, within HP15_3792at 4014.718 kb on + strand, within HP15_3792at 4014.765 kb on + strand, within HP15_3792at 4014.765 kb on + strand, within HP15_3792at 4014.765 kb on + strand, within HP15_3792at 4014.773 kb on - strand, within HP15_3792at 4014.773 kb on - strand, within HP15_3792at 4014.773 kb on - strand, within HP15_3792at 4014.773 kb on - strand, within HP15_3792at 4014.773 kb on - strand, within HP15_3792at 4014.773 kb on - strand, within HP15_3792at 4014.802 kb on + strand, within HP15_3792at 4014.869 kb on - strand, within HP15_3792at 4014.922 kb on - strand, within HP15_3792at 4014.922 kb on - strand, within HP15_3792at 4015.004 kb on - strand, within HP15_3792at 4015.022 kb on - strand, within HP15_3792at 4015.047 kb on + strand, within HP15_3792at 4015.084 kb on - strand, within HP15_3792at 4015.089 kb on + strand, within HP15_3792at 4015.089 kb on + strand, within HP15_3792at 4015.092 kb on - strand, within HP15_3792at 4015.114 kb on + strand, within HP15_3792at 4015.119 kb on + strand, within HP15_3792at 4015.124 kb on + strand, within HP15_3792at 4015.132 kb on - strand, within HP15_3792at 4015.230 kb on + strand, within HP15_3792at 4015.324 kb on + strand, within HP15_3792at 4015.343 kb on + strand, within HP15_3792at 4015.396 kb on + strand, within HP15_3792at 4015.402 kb on - strand, within HP15_3792at 4015.429 kb on - strand, within HP15_3792at 4015.529 kb on - strand, within HP15_3792at 4015.544 kb on + strand, within HP15_3792at 4015.571 kb on - strand, within HP15_3792at 4015.606 kb on + strand, within HP15_3792at 4015.626 kb on - strand, within HP15_3792at 4015.647 kb on - strand, within HP15_3792at 4015.703 kb on - strand, within HP15_3792at 4015.707 kb on + strand, within HP15_3792at 4015.747 kb on - strand, within HP15_3792at 4015.828 kb on - strand, within HP15_3792at 4015.828 kb on - strand, within HP15_3792at 4015.830 kb on + strand, within HP15_3792at 4015.911 kb on - strand, within HP15_3792at 4015.974 kb on + strandat 4016.009 kb on - strandat 4016.032 kb on - strandat 4016.075 kb on - strandat 4016.082 kb on + strandat 4016.133 kb on + strandat 4016.141 kb on - strandat 4016.160 kb on - strandat 4016.250 kb on + strandat 4016.290 kb on + strandat 4016.290 kb on + strandat 4016.290 kb on + strandat 4016.290 kb on + strandat 4016.290 kb on + strandat 4016.290 kb on + strandat 4016.298 kb on - strandat 4016.325 kb on - strandat 4016.327 kb on + strandat 4016.340 kb on - strandat 4016.393 kb on + strandat 4016.413 kb on + strandat 4016.524 kb on + strand, within HP15_3793at 4016.548 kb on + strand, within HP15_3793at 4016.561 kb on - strand, within HP15_3793at 4016.645 kb on - strand, within HP15_3793at 4016.800 kb on + strand, within HP15_3793at 4016.879 kb on + strand, within HP15_3793at 4016.903 kb on + strand, within HP15_3793at 4016.903 kb on + strand, within HP15_3793at 4016.911 kb on - strand, within HP15_3793at 4016.926 kb on + strand, within HP15_3793at 4016.965 kb on + strand, within HP15_3793

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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4,013,091 - HP15_3791 0.36 -1.5
4,013,306 + HP15_3791 0.60 +0.4
4,013,362 - HP15_3791 0.66 +0.4
4,013,364 - HP15_3791 0.67 -0.8
4,013,429 + HP15_3791 0.74 -0.8
4,013,472 - HP15_3791 0.79 +0.1
4,013,563 + HP15_3791 0.89 +0.3
4,013,615 - +1.4
4,013,658 - +0.1
4,013,720 - +0.0
4,013,785 - +0.2
4,013,877 + -0.0
4,013,885 - -1.9
4,013,885 - +0.6
4,014,010 + +0.3
4,014,061 - +0.9
4,014,080 - +0.2
4,014,085 + -0.1
4,014,085 + -0.7
4,014,152 + -0.7
4,014,162 + +1.0
4,014,217 + HP15_3792 0.11 -1.2
4,014,225 - HP15_3792 0.12 -0.0
4,014,239 - HP15_3792 0.12 +0.1
4,014,252 + HP15_3792 0.13 -0.3
4,014,262 - HP15_3792 0.13 -1.0
4,014,315 + HP15_3792 0.16 +0.1
4,014,323 - HP15_3792 0.16 +0.3
4,014,350 + HP15_3792 0.17 +0.8
4,014,363 + HP15_3792 0.18 -1.1
4,014,363 + HP15_3792 0.18 +0.5
4,014,371 - HP15_3792 0.18 +0.8
4,014,371 - HP15_3792 0.18 -2.6
4,014,371 - HP15_3792 0.18 -1.2
4,014,385 - HP15_3792 0.19 +1.7
4,014,385 - HP15_3792 0.19 +0.6
4,014,387 + HP15_3792 0.19 +1.2
4,014,387 + HP15_3792 0.19 +0.3
4,014,395 - HP15_3792 0.19 -0.2
4,014,409 + HP15_3792 0.20 +0.3
4,014,423 + HP15_3792 0.21 +0.3
4,014,481 + HP15_3792 0.23 -1.0
4,014,489 - HP15_3792 0.24 -3.4
4,014,580 + HP15_3792 0.28 -2.3
4,014,580 + HP15_3792 0.28 +1.3
4,014,580 + HP15_3792 0.28 -1.3
4,014,580 + HP15_3792 0.28 -2.0
4,014,582 + HP15_3792 0.28 +0.7
4,014,622 - HP15_3792 0.30 +0.2
4,014,637 + HP15_3792 0.30 -0.5
4,014,679 + HP15_3792 0.32 +0.2
4,014,687 - HP15_3792 0.33 +1.0
4,014,692 - HP15_3792 0.33 -0.4
4,014,718 + HP15_3792 0.34 +0.9
4,014,765 + HP15_3792 0.36 +0.3
4,014,765 + HP15_3792 0.36 +0.4
4,014,765 + HP15_3792 0.36 -0.1
4,014,773 - HP15_3792 0.37 +0.5
4,014,773 - HP15_3792 0.37 -0.4
4,014,773 - HP15_3792 0.37 +0.2
4,014,773 - HP15_3792 0.37 -0.7
4,014,773 - HP15_3792 0.37 +0.4
4,014,773 - HP15_3792 0.37 +0.0
4,014,802 + HP15_3792 0.38 +0.5
4,014,869 - HP15_3792 0.41 -0.0
4,014,922 - HP15_3792 0.44 +1.7
4,014,922 - HP15_3792 0.44 +0.3
4,015,004 - HP15_3792 0.47 +0.3
4,015,022 - HP15_3792 0.48 +0.8
4,015,047 + HP15_3792 0.49 +0.0
4,015,084 - HP15_3792 0.51 +0.1
4,015,089 + HP15_3792 0.51 +0.4
4,015,089 + HP15_3792 0.51 -0.9
4,015,092 - HP15_3792 0.51 +0.9
4,015,114 + HP15_3792 0.52 +1.5
4,015,119 + HP15_3792 0.53 -0.2
4,015,124 + HP15_3792 0.53 -1.3
4,015,132 - HP15_3792 0.53 +0.8
4,015,230 + HP15_3792 0.58 -0.1
4,015,324 + HP15_3792 0.62 +0.0
4,015,343 + HP15_3792 0.63 -0.2
4,015,396 + HP15_3792 0.65 +0.3
4,015,402 - HP15_3792 0.66 +0.1
4,015,429 - HP15_3792 0.67 -0.9
4,015,529 - HP15_3792 0.71 +0.3
4,015,544 + HP15_3792 0.72 +0.5
4,015,571 - HP15_3792 0.73 +0.1
4,015,606 + HP15_3792 0.75 -0.3
4,015,626 - HP15_3792 0.76 +0.7
4,015,647 - HP15_3792 0.77 +0.1
4,015,703 - HP15_3792 0.79 +0.5
4,015,707 + HP15_3792 0.80 +0.3
4,015,747 - HP15_3792 0.81 +0.9
4,015,828 - HP15_3792 0.85 +0.4
4,015,828 - HP15_3792 0.85 +0.2
4,015,830 + HP15_3792 0.85 +0.5
4,015,911 - HP15_3792 0.89 +0.3
4,015,974 + +0.3
4,016,009 - -2.8
4,016,032 - +0.6
4,016,075 - -0.3
4,016,082 + +1.2
4,016,133 + -2.6
4,016,141 - +0.7
4,016,160 - +0.4
4,016,250 + -0.7
4,016,290 + -0.2
4,016,290 + +2.3
4,016,290 + +0.2
4,016,290 + +0.8
4,016,290 + -0.4
4,016,290 + +0.1
4,016,298 - +0.0
4,016,325 - -0.3
4,016,327 + -0.0
4,016,340 - -0.0
4,016,393 + -1.1
4,016,413 + -1.9
4,016,524 + HP15_3793 0.16 -0.1
4,016,548 + HP15_3793 0.18 -2.3
4,016,561 - HP15_3793 0.19 +0.6
4,016,645 - HP15_3793 0.25 +0.8
4,016,800 + HP15_3793 0.36 -0.5
4,016,879 + HP15_3793 0.41 +0.5
4,016,903 + HP15_3793 0.43 -0.1
4,016,903 + HP15_3793 0.43 +0.2
4,016,911 - HP15_3793 0.44 -1.5
4,016,926 + HP15_3793 0.45 +0.4
4,016,965 + HP15_3793 0.47 +0.1

Or see this region's nucleotide sequence