Strain Fitness in Marinobacter adhaerens HP15 around HP15_3614

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3612 and HP15_3613 are separated by 155 nucleotidesHP15_3613 and HP15_3614 are separated by 143 nucleotidesHP15_3614 and HP15_3615 are separated by 1 nucleotidesHP15_3615 and HP15_3616 are separated by 156 nucleotides HP15_3612: HP15_3612 - monooxygenase, flavin-binding family protein, at 3,808,302 to 3,809,828 _3612 HP15_3613: HP15_3613 - conserved hypothetical protein, membrane, at 3,809,984 to 3,810,532 _3613 HP15_3614: HP15_3614 - histone deacetylase superfamily, at 3,810,676 to 3,811,710 _3614 HP15_3615: HP15_3615 - ribosomal RNA large subunit methyltransferase J, at 3,811,712 to 3,812,332 _3615 HP15_3616: HP15_3616 - tRNA/rRNA methyltransferase (SpoU), at 3,812,489 to 3,813,217 _3616 Position (kb) 3810 3811 3812Strain fitness (log2 ratio) -3 -2 -1 0 1at 3809.687 kb on + strandat 3809.695 kb on - strandat 3809.716 kb on + strandat 3809.824 kb on + strandat 3809.832 kb on - strandat 3810.059 kb on - strand, within HP15_3613at 3810.061 kb on + strand, within HP15_3613at 3810.122 kb on + strand, within HP15_3613at 3810.137 kb on + strand, within HP15_3613at 3810.165 kb on - strand, within HP15_3613at 3810.264 kb on - strand, within HP15_3613at 3810.285 kb on - strand, within HP15_3613at 3810.338 kb on + strand, within HP15_3613at 3810.343 kb on + strand, within HP15_3613at 3810.346 kb on - strand, within HP15_3613at 3810.346 kb on - strand, within HP15_3613at 3810.351 kb on - strand, within HP15_3613at 3810.351 kb on - strand, within HP15_3613at 3810.351 kb on - strand, within HP15_3613at 3810.488 kb on + strandat 3810.514 kb on - strandat 3810.641 kb on - strandat 3810.722 kb on - strandat 3810.722 kb on - strandat 3810.781 kb on + strand, within HP15_3614at 3810.799 kb on - strand, within HP15_3614at 3810.866 kb on - strand, within HP15_3614at 3810.978 kb on + strand, within HP15_3614at 3811.003 kb on + strand, within HP15_3614at 3811.072 kb on + strand, within HP15_3614at 3811.073 kb on + strand, within HP15_3614at 3811.121 kb on + strand, within HP15_3614at 3811.121 kb on + strand, within HP15_3614at 3811.126 kb on + strand, within HP15_3614at 3811.129 kb on - strand, within HP15_3614at 3811.129 kb on - strand, within HP15_3614at 3811.131 kb on + strand, within HP15_3614at 3811.134 kb on - strand, within HP15_3614at 3811.147 kb on - strand, within HP15_3614at 3811.246 kb on + strand, within HP15_3614at 3811.277 kb on + strand, within HP15_3614at 3811.285 kb on - strand, within HP15_3614at 3811.324 kb on - strand, within HP15_3614at 3811.329 kb on - strand, within HP15_3614at 3811.398 kb on + strand, within HP15_3614at 3811.434 kb on + strand, within HP15_3614at 3811.442 kb on - strand, within HP15_3614at 3811.444 kb on + strand, within HP15_3614at 3811.681 kb on + strandat 3811.689 kb on - strandat 3811.705 kb on + strandat 3811.783 kb on + strand, within HP15_3615at 3811.793 kb on + strand, within HP15_3615at 3811.825 kb on + strand, within HP15_3615at 3811.923 kb on + strand, within HP15_3615at 3811.931 kb on - strand, within HP15_3615at 3811.946 kb on - strand, within HP15_3615at 3812.005 kb on + strand, within HP15_3615at 3812.013 kb on - strand, within HP15_3615at 3812.017 kb on - strand, within HP15_3615at 3812.093 kb on + strand, within HP15_3615at 3812.100 kb on - strand, within HP15_3615at 3812.166 kb on - strand, within HP15_3615at 3812.190 kb on + strand, within HP15_3615at 3812.227 kb on + strand, within HP15_3615at 3812.261 kb on - strand, within HP15_3615at 3812.304 kb on - strandat 3812.378 kb on + strandat 3812.574 kb on + strand, within HP15_3616at 3812.665 kb on + strand, within HP15_3616at 3812.673 kb on - strand, within HP15_3616

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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3,809,687 + +0.1
3,809,695 - -0.3
3,809,716 + +0.3
3,809,824 + +0.4
3,809,832 - +0.7
3,810,059 - HP15_3613 0.14 -2.1
3,810,061 + HP15_3613 0.14 +0.5
3,810,122 + HP15_3613 0.25 -1.6
3,810,137 + HP15_3613 0.28 +1.6
3,810,165 - HP15_3613 0.33 +0.6
3,810,264 - HP15_3613 0.51 +0.4
3,810,285 - HP15_3613 0.55 -0.5
3,810,338 + HP15_3613 0.64 +0.1
3,810,343 + HP15_3613 0.65 -2.0
3,810,346 - HP15_3613 0.66 -0.7
3,810,346 - HP15_3613 0.66 +0.2
3,810,351 - HP15_3613 0.67 -0.1
3,810,351 - HP15_3613 0.67 +0.2
3,810,351 - HP15_3613 0.67 +0.2
3,810,488 + +0.3
3,810,514 - -0.6
3,810,641 - +0.3
3,810,722 - -1.2
3,810,722 - -0.4
3,810,781 + HP15_3614 0.10 -0.9
3,810,799 - HP15_3614 0.12 -0.3
3,810,866 - HP15_3614 0.18 -1.0
3,810,978 + HP15_3614 0.29 +0.2
3,811,003 + HP15_3614 0.32 -1.4
3,811,072 + HP15_3614 0.38 +0.1
3,811,073 + HP15_3614 0.38 +0.3
3,811,121 + HP15_3614 0.43 -1.9
3,811,121 + HP15_3614 0.43 -2.1
3,811,126 + HP15_3614 0.43 -0.8
3,811,129 - HP15_3614 0.44 +0.2
3,811,129 - HP15_3614 0.44 -2.8
3,811,131 + HP15_3614 0.44 -0.0
3,811,134 - HP15_3614 0.44 +0.1
3,811,147 - HP15_3614 0.46 -0.4
3,811,246 + HP15_3614 0.55 +0.1
3,811,277 + HP15_3614 0.58 -0.1
3,811,285 - HP15_3614 0.59 -0.6
3,811,324 - HP15_3614 0.63 -0.2
3,811,329 - HP15_3614 0.63 -0.2
3,811,398 + HP15_3614 0.70 +0.7
3,811,434 + HP15_3614 0.73 -1.5
3,811,442 - HP15_3614 0.74 -1.0
3,811,444 + HP15_3614 0.74 -0.3
3,811,681 + -1.4
3,811,689 - -0.9
3,811,705 + +0.3
3,811,783 + HP15_3615 0.11 -1.8
3,811,793 + HP15_3615 0.13 +0.8
3,811,825 + HP15_3615 0.18 +0.6
3,811,923 + HP15_3615 0.34 +0.1
3,811,931 - HP15_3615 0.35 -3.3
3,811,946 - HP15_3615 0.38 -0.3
3,812,005 + HP15_3615 0.47 +0.2
3,812,013 - HP15_3615 0.48 -0.0
3,812,017 - HP15_3615 0.49 +0.4
3,812,093 + HP15_3615 0.61 +0.5
3,812,100 - HP15_3615 0.62 -0.8
3,812,166 - HP15_3615 0.73 -1.8
3,812,190 + HP15_3615 0.77 -0.6
3,812,227 + HP15_3615 0.83 -0.8
3,812,261 - HP15_3615 0.88 +0.5
3,812,304 - -0.5
3,812,378 + +0.7
3,812,574 + HP15_3616 0.12 -0.2
3,812,665 + HP15_3616 0.24 +0.4
3,812,673 - HP15_3616 0.25 +0.1

Or see this region's nucleotide sequence