Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3612 and HP15_3613 are separated by 155 nucleotides HP15_3613 and HP15_3614 are separated by 143 nucleotides HP15_3614 and HP15_3615 are separated by 1 nucleotides HP15_3615 and HP15_3616 are separated by 156 nucleotides
HP15_3612: HP15_3612 - monooxygenase, flavin-binding family protein, at 3,808,302 to 3,809,828
_3612
HP15_3613: HP15_3613 - conserved hypothetical protein, membrane, at 3,809,984 to 3,810,532
_3613
HP15_3614: HP15_3614 - histone deacetylase superfamily, at 3,810,676 to 3,811,710
_3614
HP15_3615: HP15_3615 - ribosomal RNA large subunit methyltransferase J, at 3,811,712 to 3,812,332
_3615
HP15_3616: HP15_3616 - tRNA/rRNA methyltransferase (SpoU), at 3,812,489 to 3,813,217
_3616
Position (kb)
3810
3811
3812 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3809.687 kb on + strand at 3809.695 kb on - strand at 3809.716 kb on + strand at 3809.824 kb on + strand at 3809.832 kb on - strand at 3810.059 kb on - strand, within HP15_3613 at 3810.061 kb on + strand, within HP15_3613 at 3810.122 kb on + strand, within HP15_3613 at 3810.137 kb on + strand, within HP15_3613 at 3810.165 kb on - strand, within HP15_3613 at 3810.264 kb on - strand, within HP15_3613 at 3810.285 kb on - strand, within HP15_3613 at 3810.338 kb on + strand, within HP15_3613 at 3810.343 kb on + strand, within HP15_3613 at 3810.346 kb on - strand, within HP15_3613 at 3810.346 kb on - strand, within HP15_3613 at 3810.351 kb on - strand, within HP15_3613 at 3810.351 kb on - strand, within HP15_3613 at 3810.351 kb on - strand, within HP15_3613 at 3810.488 kb on + strand at 3810.514 kb on - strand at 3810.641 kb on - strand at 3810.722 kb on - strand at 3810.722 kb on - strand at 3810.781 kb on + strand, within HP15_3614 at 3810.799 kb on - strand, within HP15_3614 at 3810.866 kb on - strand, within HP15_3614 at 3810.978 kb on + strand, within HP15_3614 at 3811.003 kb on + strand, within HP15_3614 at 3811.072 kb on + strand, within HP15_3614 at 3811.073 kb on + strand, within HP15_3614 at 3811.121 kb on + strand, within HP15_3614 at 3811.121 kb on + strand, within HP15_3614 at 3811.126 kb on + strand, within HP15_3614 at 3811.129 kb on - strand, within HP15_3614 at 3811.129 kb on - strand, within HP15_3614 at 3811.131 kb on + strand, within HP15_3614 at 3811.134 kb on - strand, within HP15_3614 at 3811.147 kb on - strand, within HP15_3614 at 3811.246 kb on + strand, within HP15_3614 at 3811.277 kb on + strand, within HP15_3614 at 3811.285 kb on - strand, within HP15_3614 at 3811.324 kb on - strand, within HP15_3614 at 3811.329 kb on - strand, within HP15_3614 at 3811.398 kb on + strand, within HP15_3614 at 3811.434 kb on + strand, within HP15_3614 at 3811.442 kb on - strand, within HP15_3614 at 3811.444 kb on + strand, within HP15_3614 at 3811.681 kb on + strand at 3811.689 kb on - strand at 3811.705 kb on + strand at 3811.783 kb on + strand, within HP15_3615 at 3811.793 kb on + strand, within HP15_3615 at 3811.825 kb on + strand, within HP15_3615 at 3811.923 kb on + strand, within HP15_3615 at 3811.931 kb on - strand, within HP15_3615 at 3811.946 kb on - strand, within HP15_3615 at 3812.005 kb on + strand, within HP15_3615 at 3812.013 kb on - strand, within HP15_3615 at 3812.017 kb on - strand, within HP15_3615 at 3812.093 kb on + strand, within HP15_3615 at 3812.100 kb on - strand, within HP15_3615 at 3812.166 kb on - strand, within HP15_3615 at 3812.190 kb on + strand, within HP15_3615 at 3812.227 kb on + strand, within HP15_3615 at 3812.261 kb on - strand, within HP15_3615 at 3812.304 kb on - strand at 3812.378 kb on + strand at 3812.574 kb on + strand, within HP15_3616 at 3812.665 kb on + strand, within HP15_3616 at 3812.673 kb on - strand, within HP15_3616
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 3,809,687 + +0.1 3,809,695 - -0.3 3,809,716 + +0.3 3,809,824 + +0.4 3,809,832 - +0.7 3,810,059 - HP15_3613 0.14 -2.1 3,810,061 + HP15_3613 0.14 +0.5 3,810,122 + HP15_3613 0.25 -1.6 3,810,137 + HP15_3613 0.28 +1.6 3,810,165 - HP15_3613 0.33 +0.6 3,810,264 - HP15_3613 0.51 +0.4 3,810,285 - HP15_3613 0.55 -0.5 3,810,338 + HP15_3613 0.64 +0.1 3,810,343 + HP15_3613 0.65 -2.0 3,810,346 - HP15_3613 0.66 -0.7 3,810,346 - HP15_3613 0.66 +0.2 3,810,351 - HP15_3613 0.67 -0.1 3,810,351 - HP15_3613 0.67 +0.2 3,810,351 - HP15_3613 0.67 +0.2 3,810,488 + +0.3 3,810,514 - -0.6 3,810,641 - +0.3 3,810,722 - -1.2 3,810,722 - -0.4 3,810,781 + HP15_3614 0.10 -0.9 3,810,799 - HP15_3614 0.12 -0.3 3,810,866 - HP15_3614 0.18 -1.0 3,810,978 + HP15_3614 0.29 +0.2 3,811,003 + HP15_3614 0.32 -1.4 3,811,072 + HP15_3614 0.38 +0.1 3,811,073 + HP15_3614 0.38 +0.3 3,811,121 + HP15_3614 0.43 -1.9 3,811,121 + HP15_3614 0.43 -2.1 3,811,126 + HP15_3614 0.43 -0.8 3,811,129 - HP15_3614 0.44 +0.2 3,811,129 - HP15_3614 0.44 -2.8 3,811,131 + HP15_3614 0.44 -0.0 3,811,134 - HP15_3614 0.44 +0.1 3,811,147 - HP15_3614 0.46 -0.4 3,811,246 + HP15_3614 0.55 +0.1 3,811,277 + HP15_3614 0.58 -0.1 3,811,285 - HP15_3614 0.59 -0.6 3,811,324 - HP15_3614 0.63 -0.2 3,811,329 - HP15_3614 0.63 -0.2 3,811,398 + HP15_3614 0.70 +0.7 3,811,434 + HP15_3614 0.73 -1.5 3,811,442 - HP15_3614 0.74 -1.0 3,811,444 + HP15_3614 0.74 -0.3 3,811,681 + -1.4 3,811,689 - -0.9 3,811,705 + +0.3 3,811,783 + HP15_3615 0.11 -1.8 3,811,793 + HP15_3615 0.13 +0.8 3,811,825 + HP15_3615 0.18 +0.6 3,811,923 + HP15_3615 0.34 +0.1 3,811,931 - HP15_3615 0.35 -3.3 3,811,946 - HP15_3615 0.38 -0.3 3,812,005 + HP15_3615 0.47 +0.2 3,812,013 - HP15_3615 0.48 -0.0 3,812,017 - HP15_3615 0.49 +0.4 3,812,093 + HP15_3615 0.61 +0.5 3,812,100 - HP15_3615 0.62 -0.8 3,812,166 - HP15_3615 0.73 -1.8 3,812,190 + HP15_3615 0.77 -0.6 3,812,227 + HP15_3615 0.83 -0.8 3,812,261 - HP15_3615 0.88 +0.5 3,812,304 - -0.5 3,812,378 + +0.7 3,812,574 + HP15_3616 0.12 -0.2 3,812,665 + HP15_3616 0.24 +0.4 3,812,673 - HP15_3616 0.25 +0.1
Or see this region's nucleotide sequence