Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32630

Experiment: No vitamins t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	No vitamins t1
3,418,794	+				-0.4
3,418,798	+				-0.8
3,418,854	+				+0.2
3,418,860	-				-1.1
3,418,862	+				+1.2
3,418,862	-				-0.2
3,418,862	-				-0.2
3,418,862	-				+1.1
3,418,867	+				-0.0
3,418,878	+				-0.4
3,418,878	+				-0.0
3,418,886	-				-2.8
3,418,917	-				+0.1
3,418,920	+				-0.8
3,418,971	+		PGA1_c32620	0.13	-0.6
3,418,981	+		PGA1_c32620	0.14	+1.0
3,418,981	+		PGA1_c32620	0.14	+0.6
3,418,989	-		PGA1_c32620	0.15	+2.6
3,419,003	+		PGA1_c32620	0.17	-1.0
3,419,021	-		PGA1_c32620	0.19	-0.7
3,419,091	-		PGA1_c32620	0.28	+0.6
3,419,176	-		PGA1_c32620	0.39	+1.2
3,419,176	-		PGA1_c32620	0.39	-1.7
3,419,180	+		PGA1_c32620	0.39	+0.3
3,419,182	+		PGA1_c32620	0.39	+0.0
3,419,264	+		PGA1_c32620	0.49	+0.3
3,419,329	+		PGA1_c32620	0.57	+0.2
3,419,330	+		PGA1_c32620	0.58	-0.6
3,419,349	+		PGA1_c32620	0.60	+1.0
3,419,357	-		PGA1_c32620	0.61	-0.8
3,419,395	+		PGA1_c32620	0.66	-0.0
3,419,395	+		PGA1_c32620	0.66	+0.9
3,419,409	+		PGA1_c32620	0.67	+0.7
3,419,417	-		PGA1_c32620	0.68	-0.9
3,419,437	-		PGA1_c32620	0.71	+1.1
3,419,504	-		PGA1_c32620	0.79	+1.6
3,419,525	-		PGA1_c32620	0.82	+0.6
3,419,539	+		PGA1_c32620	0.83	-0.0
3,419,677	+				+0.2
3,419,677	-				+0.2
3,419,677	-				-0.8
3,419,685	-				-0.8
3,419,714	+				-0.8
3,419,722	-				-1.2
3,419,722	-				+0.7
3,419,722	-				-0.4
3,419,789	-				+0.8
3,419,802	+				-0.3
3,419,816	-				+0.4
3,419,828	-				-1.2
3,419,835	+				+0.6
3,419,840	+				-1.2
3,419,840	+				+0.2
3,419,843	-				+0.6
3,419,848	-				-0.2
3,419,848	-				-0.6
3,419,848	-				-0.7
3,419,848	-				+0.1
3,419,848	-				-0.3
3,419,959	+				+0.3
3,419,967	-		PGA1_c32630	0.10	-0.9
3,419,974	-		PGA1_c32630	0.10	+1.6
3,420,028	-		PGA1_c32630	0.13	-0.2
3,420,106	+		PGA1_c32630	0.17	-0.0
3,420,106	+		PGA1_c32630	0.17	+0.4
3,420,117	+		PGA1_c32630	0.18	+0.2
3,420,147	+		PGA1_c32630	0.19	+1.2
3,420,147	+		PGA1_c32630	0.19	-1.4
3,420,152	+		PGA1_c32630	0.20	-2.0
3,420,152	+		PGA1_c32630	0.20	+0.6
3,420,165	+		PGA1_c32630	0.20	-0.4
3,420,184	+		PGA1_c32630	0.21	+0.5
3,420,184	+		PGA1_c32630	0.21	+1.0
3,420,185	-		PGA1_c32630	0.21	-0.1
3,420,199	+		PGA1_c32630	0.22	-1.1
3,420,207	-		PGA1_c32630	0.22	+0.2
3,420,212	+		PGA1_c32630	0.23	+0.4
3,420,215	-		PGA1_c32630	0.23	-0.3
3,420,219	-		PGA1_c32630	0.23	-0.0
3,420,220	-		PGA1_c32630	0.23	-1.0
3,420,230	+		PGA1_c32630	0.24	+0.3
3,420,230	-		PGA1_c32630	0.24	+2.2
3,420,240	-		PGA1_c32630	0.24	-0.8
3,420,418	-		PGA1_c32630	0.33	-0.5
3,420,500	+		PGA1_c32630	0.38	+0.1
3,420,500	-		PGA1_c32630	0.38	-0.2
3,420,549	-		PGA1_c32630	0.40	+0.1
3,420,571	-		PGA1_c32630	0.41	+1.1
3,420,582	+		PGA1_c32630	0.42	+0.2
3,420,588	+		PGA1_c32630	0.42	+1.4
3,420,598	-		PGA1_c32630	0.43	-0.6
3,420,606	-		PGA1_c32630	0.43	+2.3
3,420,606	-		PGA1_c32630	0.43	+0.1
3,420,645	+		PGA1_c32630	0.45	-0.6
3,420,670	-		PGA1_c32630	0.46	-0.0
3,420,670	-		PGA1_c32630	0.46	+1.0
3,420,670	-		PGA1_c32630	0.46	+0.8
3,420,697	-		PGA1_c32630	0.48	-1.0
3,420,711	+		PGA1_c32630	0.48	-0.8
3,420,719	-		PGA1_c32630	0.49	+4.2
3,420,719	-		PGA1_c32630	0.49	+0.2
3,420,719	-		PGA1_c32630	0.49	+1.9
3,420,719	-		PGA1_c32630	0.49	-0.0
3,420,805	+		PGA1_c32630	0.53	+2.9
3,420,815	-		PGA1_c32630	0.54	-1.2
3,420,966	-		PGA1_c32630	0.61	-0.3
3,420,968	+		PGA1_c32630	0.62	+1.0
3,421,031	-		PGA1_c32630	0.65	+1.2
3,421,046	-		PGA1_c32630	0.66	-0.7
3,421,052	+		PGA1_c32630	0.66	+0.7
3,421,070	-		PGA1_c32630	0.67	+0.3
3,421,081	-		PGA1_c32630	0.67	+0.7
3,421,123	+		PGA1_c32630	0.70	+0.8
3,421,126	-		PGA1_c32630	0.70	+1.0
3,421,126	-		PGA1_c32630	0.70	+1.6
3,421,126	-		PGA1_c32630	0.70	+0.1
3,421,131	+		PGA1_c32630	0.70	-0.4
3,421,131	+		PGA1_c32630	0.70	-1.4
3,421,131	+		PGA1_c32630	0.70	+0.8
3,421,131	-		PGA1_c32630	0.70	+0.6
3,421,139	-		PGA1_c32630	0.70	-0.7
3,421,139	-		PGA1_c32630	0.70	-1.8
3,421,149	-		PGA1_c32630	0.71	+1.0
3,421,158	+		PGA1_c32630	0.71	+0.3
3,421,173	-		PGA1_c32630	0.72	-0.1
3,421,221	-		PGA1_c32630	0.75	+0.9
3,421,222	+		PGA1_c32630	0.75	+0.2
3,421,239	+		PGA1_c32630	0.76	-0.2
3,421,244	+		PGA1_c32630	0.76	-0.8
3,421,259	-		PGA1_c32630	0.77	-0.4
3,421,317	-		PGA1_c32630	0.80	-0.5
3,421,317	-		PGA1_c32630	0.80	-0.1
3,421,327	+		PGA1_c32630	0.80	+0.8
3,421,345	-		PGA1_c32630	0.81	+0.3
3,421,373	-		PGA1_c32630	0.82	-0.8
3,421,410	-		PGA1_c32630	0.84	-1.8
3,421,447	+		PGA1_c32630	0.86	+2.3
3,421,453	+		PGA1_c32630	0.87	+1.6
3,421,606	+				+0.8
3,421,624	-				+0.7
3,421,625	-				-1.2
3,421,663	-				-0.0
3,421,664	-				-0.9
3,421,701	+				+1.6
3,421,717	-				-0.5
3,421,730	-				+1.2
3,421,741	-				-0.4
3,421,752	+				-0.0
3,421,765	-				+0.1
3,421,820	+				+1.1
3,421,828	-				+0.7
3,421,828	-				-0.2
3,421,828	-				-0.8
3,421,905	+				+0.6
3,421,907	+				-0.8
3,421,913	-				-2.5
3,421,919	+				+0.5
3,421,927	-				+2.6
3,421,929	+				-0.4
3,422,017	+				+0.6
3,422,025	-				-0.0
3,422,134	-				+1.1
3,422,139	-				+0.2
3,422,227	-		PGA1_c32640	0.13	+0.3
3,422,286	-		PGA1_c32640	0.16	+0.6
3,422,312	-		PGA1_c32640	0.17	-0.6
3,422,317	+		PGA1_c32640	0.17	+0.5
3,422,325	-		PGA1_c32640	0.18	+0.4
3,422,326	-		PGA1_c32640	0.18	+0.2
3,422,380	+		PGA1_c32640	0.21	-2.1
3,422,483	-		PGA1_c32640	0.26	-0.8
3,422,522	-		PGA1_c32640	0.28	-0.8
3,422,524	+		PGA1_c32640	0.28	-0.7
3,422,580	-		PGA1_c32640	0.31	-0.3
3,422,580	-		PGA1_c32640	0.31	-0.4
3,422,590	-		PGA1_c32640	0.32	+0.4
3,422,604	+		PGA1_c32640	0.33	-1.0
3,422,677	+		PGA1_c32640	0.36	-0.2
3,422,683	+		PGA1_c32640	0.37	-0.7
3,422,696	-		PGA1_c32640	0.37	+0.5