Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2686 and HP15_2687 overlap by 11 nucleotides HP15_2687 and HP15_2688 are separated by 38 nucleotides HP15_2688 and HP15_2689 are separated by 170 nucleotides
HP15_2686: HP15_2686 - allophanate hydrolase subunit 1, at 2,833,741 to 2,834,433
_2686
HP15_2687: HP15_2687 - urea amidolyase related protein, at 2,834,423 to 2,835,361
_2687
HP15_2688: HP15_2688 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) , at 2,835,400 to 2,839,029
_2688
HP15_2689: HP15_2689 - NAD-specific glutamate dehydrogenase, at 2,839,200 to 2,842,586
_2689
Position (kb)
2835
2836
2837
2838
2839
2840 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2834.526 kb on + strand, within HP15_2687 at 2834.601 kb on + strand, within HP15_2687 at 2834.713 kb on + strand, within HP15_2687 at 2834.778 kb on + strand, within HP15_2687 at 2834.877 kb on - strand, within HP15_2687 at 2835.309 kb on + strand at 2835.351 kb on + strand at 2835.359 kb on - strand at 2835.459 kb on + strand at 2835.467 kb on - strand at 2835.491 kb on - strand at 2835.559 kb on - strand at 2835.677 kb on + strand at 2835.713 kb on - strand at 2835.734 kb on + strand at 2835.814 kb on + strand, within HP15_2688 at 2835.921 kb on + strand, within HP15_2688 at 2836.071 kb on + strand, within HP15_2688 at 2836.132 kb on + strand, within HP15_2688 at 2836.229 kb on - strand, within HP15_2688 at 2836.281 kb on - strand, within HP15_2688 at 2836.316 kb on - strand, within HP15_2688 at 2836.316 kb on - strand, within HP15_2688 at 2836.426 kb on - strand, within HP15_2688 at 2836.466 kb on - strand, within HP15_2688 at 2836.574 kb on - strand, within HP15_2688 at 2836.645 kb on - strand, within HP15_2688 at 2836.645 kb on - strand, within HP15_2688 at 2836.734 kb on + strand, within HP15_2688 at 2836.786 kb on + strand, within HP15_2688 at 2836.794 kb on - strand, within HP15_2688 at 2836.930 kb on - strand, within HP15_2688 at 2836.950 kb on - strand, within HP15_2688 at 2837.048 kb on + strand, within HP15_2688 at 2837.048 kb on + strand, within HP15_2688 at 2837.080 kb on + strand, within HP15_2688 at 2837.112 kb on - strand, within HP15_2688 at 2837.152 kb on - strand, within HP15_2688 at 2837.241 kb on + strand, within HP15_2688 at 2837.254 kb on + strand, within HP15_2688 at 2837.254 kb on + strand, within HP15_2688 at 2837.254 kb on + strand, within HP15_2688 at 2837.262 kb on - strand, within HP15_2688 at 2837.446 kb on + strand, within HP15_2688 at 2837.468 kb on + strand, within HP15_2688 at 2837.492 kb on + strand, within HP15_2688 at 2837.526 kb on + strand, within HP15_2688 at 2837.701 kb on + strand, within HP15_2688 at 2837.776 kb on - strand, within HP15_2688 at 2837.776 kb on - strand, within HP15_2688 at 2837.776 kb on - strand, within HP15_2688 at 2837.776 kb on - strand, within HP15_2688 at 2837.859 kb on - strand, within HP15_2688 at 2837.930 kb on + strand, within HP15_2688 at 2837.953 kb on - strand, within HP15_2688 at 2838.069 kb on - strand, within HP15_2688 at 2838.075 kb on + strand, within HP15_2688 at 2838.083 kb on - strand, within HP15_2688 at 2838.141 kb on + strand, within HP15_2688 at 2838.251 kb on + strand, within HP15_2688 at 2838.458 kb on + strand, within HP15_2688 at 2838.466 kb on - strand, within HP15_2688 at 2838.508 kb on + strand, within HP15_2688 at 2838.560 kb on + strand, within HP15_2688 at 2838.568 kb on - strand, within HP15_2688 at 2838.581 kb on + strand, within HP15_2688 at 2838.588 kb on - strand, within HP15_2688 at 2838.636 kb on + strand, within HP15_2688 at 2838.660 kb on + strand, within HP15_2688 at 2838.660 kb on + strand, within HP15_2688 at 2838.668 kb on - strand at 2838.668 kb on - strand at 2838.775 kb on + strand at 2838.775 kb on + strand at 2838.775 kb on + strand at 2838.775 kb on + strand at 2838.783 kb on - strand at 2838.783 kb on - strand at 2838.783 kb on - strand at 2838.783 kb on - strand at 2838.913 kb on - strand at 2838.913 kb on - strand at 2838.944 kb on + strand at 2839.480 kb on - strand at 2839.522 kb on - strand at 2839.524 kb on - strand at 2839.840 kb on - strand, within HP15_2689 at 2839.862 kb on - strand, within HP15_2689 at 2839.999 kb on - strand, within HP15_2689 at 2840.004 kb on - strand, within HP15_2689
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 2,834,526 + HP15_2687 0.11 +0.5 2,834,601 + HP15_2687 0.19 -2.9 2,834,713 + HP15_2687 0.31 -1.4 2,834,778 + HP15_2687 0.38 -1.9 2,834,877 - HP15_2687 0.48 -2.7 2,835,309 + -1.0 2,835,351 + -0.3 2,835,359 - -0.5 2,835,459 + +1.4 2,835,467 - -2.6 2,835,491 - -0.2 2,835,559 - -0.3 2,835,677 + -0.9 2,835,713 - -1.5 2,835,734 + -1.8 2,835,814 + HP15_2688 0.11 -1.0 2,835,921 + HP15_2688 0.14 -1.9 2,836,071 + HP15_2688 0.18 +0.0 2,836,132 + HP15_2688 0.20 -1.1 2,836,229 - HP15_2688 0.23 -0.7 2,836,281 - HP15_2688 0.24 +0.5 2,836,316 - HP15_2688 0.25 -1.6 2,836,316 - HP15_2688 0.25 -0.5 2,836,426 - HP15_2688 0.28 -0.9 2,836,466 - HP15_2688 0.29 -1.8 2,836,574 - HP15_2688 0.32 +0.2 2,836,645 - HP15_2688 0.34 +1.1 2,836,645 - HP15_2688 0.34 +0.7 2,836,734 + HP15_2688 0.37 +0.1 2,836,786 + HP15_2688 0.38 -2.2 2,836,794 - HP15_2688 0.38 -1.5 2,836,930 - HP15_2688 0.42 -0.7 2,836,950 - HP15_2688 0.43 +0.2 2,837,048 + HP15_2688 0.45 -1.9 2,837,048 + HP15_2688 0.45 -0.5 2,837,080 + HP15_2688 0.46 -0.4 2,837,112 - HP15_2688 0.47 +0.1 2,837,152 - HP15_2688 0.48 -0.1 2,837,241 + HP15_2688 0.51 +0.5 2,837,254 + HP15_2688 0.51 -1.5 2,837,254 + HP15_2688 0.51 -1.8 2,837,254 + HP15_2688 0.51 +0.7 2,837,262 - HP15_2688 0.51 -0.9 2,837,446 + HP15_2688 0.56 -0.5 2,837,468 + HP15_2688 0.57 +0.5 2,837,492 + HP15_2688 0.58 +0.9 2,837,526 + HP15_2688 0.59 -0.9 2,837,701 + HP15_2688 0.63 +0.2 2,837,776 - HP15_2688 0.65 -0.4 2,837,776 - HP15_2688 0.65 -0.9 2,837,776 - HP15_2688 0.65 +0.2 2,837,776 - HP15_2688 0.65 +0.4 2,837,859 - HP15_2688 0.68 -0.0 2,837,930 + HP15_2688 0.70 +0.1 2,837,953 - HP15_2688 0.70 +0.3 2,838,069 - HP15_2688 0.74 -1.9 2,838,075 + HP15_2688 0.74 -0.6 2,838,083 - HP15_2688 0.74 -0.0 2,838,141 + HP15_2688 0.76 -0.5 2,838,251 + HP15_2688 0.79 -1.9 2,838,458 + HP15_2688 0.84 -1.3 2,838,466 - HP15_2688 0.84 +0.3 2,838,508 + HP15_2688 0.86 -1.6 2,838,560 + HP15_2688 0.87 -1.6 2,838,568 - HP15_2688 0.87 +0.3 2,838,581 + HP15_2688 0.88 -0.3 2,838,588 - HP15_2688 0.88 +0.2 2,838,636 + HP15_2688 0.89 -1.6 2,838,660 + HP15_2688 0.90 -0.6 2,838,660 + HP15_2688 0.90 -1.1 2,838,668 - -1.5 2,838,668 - -0.1 2,838,775 + -1.7 2,838,775 + -1.8 2,838,775 + +0.1 2,838,775 + -1.2 2,838,783 - -1.0 2,838,783 - +1.9 2,838,783 - -1.0 2,838,783 - -1.3 2,838,913 - -0.0 2,838,913 - -1.5 2,838,944 + -0.7 2,839,480 - +0.5 2,839,522 - -0.1 2,839,524 - +0.3 2,839,840 - HP15_2689 0.19 -0.9 2,839,862 - HP15_2689 0.20 +0.4 2,839,999 - HP15_2689 0.24 +0.7 2,840,004 - HP15_2689 0.24 -2.2
Or see this region's nucleotide sequence