Strain Fitness in Marinobacter adhaerens HP15 around HP15_2688

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2686 and HP15_2687 overlap by 11 nucleotidesHP15_2687 and HP15_2688 are separated by 38 nucleotidesHP15_2688 and HP15_2689 are separated by 170 nucleotides HP15_2686: HP15_2686 - allophanate hydrolase subunit 1, at 2,833,741 to 2,834,433 _2686 HP15_2687: HP15_2687 - urea amidolyase related protein, at 2,834,423 to 2,835,361 _2687 HP15_2688: HP15_2688 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 2,835,400 to 2,839,029 _2688 HP15_2689: HP15_2689 - NAD-specific glutamate dehydrogenase, at 2,839,200 to 2,842,586 _2689 Position (kb) 2835 2836 2837 2838 2839 2840Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2834.526 kb on + strand, within HP15_2687at 2834.601 kb on + strand, within HP15_2687at 2834.713 kb on + strand, within HP15_2687at 2834.778 kb on + strand, within HP15_2687at 2834.877 kb on - strand, within HP15_2687at 2835.309 kb on + strandat 2835.351 kb on + strandat 2835.359 kb on - strandat 2835.459 kb on + strandat 2835.467 kb on - strandat 2835.491 kb on - strandat 2835.559 kb on - strandat 2835.677 kb on + strandat 2835.713 kb on - strandat 2835.734 kb on + strandat 2835.814 kb on + strand, within HP15_2688at 2835.921 kb on + strand, within HP15_2688at 2836.071 kb on + strand, within HP15_2688at 2836.132 kb on + strand, within HP15_2688at 2836.229 kb on - strand, within HP15_2688at 2836.281 kb on - strand, within HP15_2688at 2836.316 kb on - strand, within HP15_2688at 2836.316 kb on - strand, within HP15_2688at 2836.426 kb on - strand, within HP15_2688at 2836.466 kb on - strand, within HP15_2688at 2836.574 kb on - strand, within HP15_2688at 2836.645 kb on - strand, within HP15_2688at 2836.645 kb on - strand, within HP15_2688at 2836.734 kb on + strand, within HP15_2688at 2836.786 kb on + strand, within HP15_2688at 2836.794 kb on - strand, within HP15_2688at 2836.930 kb on - strand, within HP15_2688at 2836.950 kb on - strand, within HP15_2688at 2837.048 kb on + strand, within HP15_2688at 2837.048 kb on + strand, within HP15_2688at 2837.080 kb on + strand, within HP15_2688at 2837.112 kb on - strand, within HP15_2688at 2837.152 kb on - strand, within HP15_2688at 2837.241 kb on + strand, within HP15_2688at 2837.254 kb on + strand, within HP15_2688at 2837.254 kb on + strand, within HP15_2688at 2837.254 kb on + strand, within HP15_2688at 2837.262 kb on - strand, within HP15_2688at 2837.446 kb on + strand, within HP15_2688at 2837.468 kb on + strand, within HP15_2688at 2837.492 kb on + strand, within HP15_2688at 2837.526 kb on + strand, within HP15_2688at 2837.701 kb on + strand, within HP15_2688at 2837.776 kb on - strand, within HP15_2688at 2837.776 kb on - strand, within HP15_2688at 2837.776 kb on - strand, within HP15_2688at 2837.776 kb on - strand, within HP15_2688at 2837.859 kb on - strand, within HP15_2688at 2837.930 kb on + strand, within HP15_2688at 2837.953 kb on - strand, within HP15_2688at 2838.069 kb on - strand, within HP15_2688at 2838.075 kb on + strand, within HP15_2688at 2838.083 kb on - strand, within HP15_2688at 2838.141 kb on + strand, within HP15_2688at 2838.251 kb on + strand, within HP15_2688at 2838.458 kb on + strand, within HP15_2688at 2838.466 kb on - strand, within HP15_2688at 2838.508 kb on + strand, within HP15_2688at 2838.560 kb on + strand, within HP15_2688at 2838.568 kb on - strand, within HP15_2688at 2838.581 kb on + strand, within HP15_2688at 2838.588 kb on - strand, within HP15_2688at 2838.636 kb on + strand, within HP15_2688at 2838.660 kb on + strand, within HP15_2688at 2838.660 kb on + strand, within HP15_2688at 2838.668 kb on - strandat 2838.668 kb on - strandat 2838.775 kb on + strandat 2838.775 kb on + strandat 2838.775 kb on + strandat 2838.775 kb on + strandat 2838.783 kb on - strandat 2838.783 kb on - strandat 2838.783 kb on - strandat 2838.783 kb on - strandat 2838.913 kb on - strandat 2838.913 kb on - strandat 2838.944 kb on + strandat 2839.480 kb on - strandat 2839.522 kb on - strandat 2839.524 kb on - strandat 2839.840 kb on - strand, within HP15_2689at 2839.862 kb on - strand, within HP15_2689at 2839.999 kb on - strand, within HP15_2689at 2840.004 kb on - strand, within HP15_2689

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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2,834,526 + HP15_2687 0.11 +0.5
2,834,601 + HP15_2687 0.19 -2.9
2,834,713 + HP15_2687 0.31 -1.4
2,834,778 + HP15_2687 0.38 -1.9
2,834,877 - HP15_2687 0.48 -2.7
2,835,309 + -1.0
2,835,351 + -0.3
2,835,359 - -0.5
2,835,459 + +1.4
2,835,467 - -2.6
2,835,491 - -0.2
2,835,559 - -0.3
2,835,677 + -0.9
2,835,713 - -1.5
2,835,734 + -1.8
2,835,814 + HP15_2688 0.11 -1.0
2,835,921 + HP15_2688 0.14 -1.9
2,836,071 + HP15_2688 0.18 +0.0
2,836,132 + HP15_2688 0.20 -1.1
2,836,229 - HP15_2688 0.23 -0.7
2,836,281 - HP15_2688 0.24 +0.5
2,836,316 - HP15_2688 0.25 -1.6
2,836,316 - HP15_2688 0.25 -0.5
2,836,426 - HP15_2688 0.28 -0.9
2,836,466 - HP15_2688 0.29 -1.8
2,836,574 - HP15_2688 0.32 +0.2
2,836,645 - HP15_2688 0.34 +1.1
2,836,645 - HP15_2688 0.34 +0.7
2,836,734 + HP15_2688 0.37 +0.1
2,836,786 + HP15_2688 0.38 -2.2
2,836,794 - HP15_2688 0.38 -1.5
2,836,930 - HP15_2688 0.42 -0.7
2,836,950 - HP15_2688 0.43 +0.2
2,837,048 + HP15_2688 0.45 -1.9
2,837,048 + HP15_2688 0.45 -0.5
2,837,080 + HP15_2688 0.46 -0.4
2,837,112 - HP15_2688 0.47 +0.1
2,837,152 - HP15_2688 0.48 -0.1
2,837,241 + HP15_2688 0.51 +0.5
2,837,254 + HP15_2688 0.51 -1.5
2,837,254 + HP15_2688 0.51 -1.8
2,837,254 + HP15_2688 0.51 +0.7
2,837,262 - HP15_2688 0.51 -0.9
2,837,446 + HP15_2688 0.56 -0.5
2,837,468 + HP15_2688 0.57 +0.5
2,837,492 + HP15_2688 0.58 +0.9
2,837,526 + HP15_2688 0.59 -0.9
2,837,701 + HP15_2688 0.63 +0.2
2,837,776 - HP15_2688 0.65 -0.4
2,837,776 - HP15_2688 0.65 -0.9
2,837,776 - HP15_2688 0.65 +0.2
2,837,776 - HP15_2688 0.65 +0.4
2,837,859 - HP15_2688 0.68 -0.0
2,837,930 + HP15_2688 0.70 +0.1
2,837,953 - HP15_2688 0.70 +0.3
2,838,069 - HP15_2688 0.74 -1.9
2,838,075 + HP15_2688 0.74 -0.6
2,838,083 - HP15_2688 0.74 -0.0
2,838,141 + HP15_2688 0.76 -0.5
2,838,251 + HP15_2688 0.79 -1.9
2,838,458 + HP15_2688 0.84 -1.3
2,838,466 - HP15_2688 0.84 +0.3
2,838,508 + HP15_2688 0.86 -1.6
2,838,560 + HP15_2688 0.87 -1.6
2,838,568 - HP15_2688 0.87 +0.3
2,838,581 + HP15_2688 0.88 -0.3
2,838,588 - HP15_2688 0.88 +0.2
2,838,636 + HP15_2688 0.89 -1.6
2,838,660 + HP15_2688 0.90 -0.6
2,838,660 + HP15_2688 0.90 -1.1
2,838,668 - -1.5
2,838,668 - -0.1
2,838,775 + -1.7
2,838,775 + -1.8
2,838,775 + +0.1
2,838,775 + -1.2
2,838,783 - -1.0
2,838,783 - +1.9
2,838,783 - -1.0
2,838,783 - -1.3
2,838,913 - -0.0
2,838,913 - -1.5
2,838,944 + -0.7
2,839,480 - +0.5
2,839,522 - -0.1
2,839,524 - +0.3
2,839,840 - HP15_2689 0.19 -0.9
2,839,862 - HP15_2689 0.20 +0.4
2,839,999 - HP15_2689 0.24 +0.7
2,840,004 - HP15_2689 0.24 -2.2

Or see this region's nucleotide sequence