Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27650

Experiment: No vitamins t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	No vitamins t1
2,879,972	+		PGA1_c27630	0.76	+0.4
2,880,023	-		PGA1_c27630	0.81	-0.1
2,880,057	-		PGA1_c27630	0.83	+0.9
2,880,062	+		PGA1_c27630	0.84	+0.1
2,880,153	-				-0.3
2,880,219	-				+0.7
2,880,261	+				-0.1
2,880,261	+				-0.9
2,880,261	+				-0.7
2,880,265	+				-0.6
2,880,265	+				+0.2
2,880,268	+				+0.6
2,880,269	-				+0.0
2,880,269	-				+0.4
2,880,330	+				-0.1
2,880,343	+				-0.4
2,880,343	+				-0.8
2,880,351	-				-0.8
2,880,362	-				-0.7
2,880,372	+				+0.6
2,880,373	-				+0.4
2,880,376	+				+0.8
2,880,384	-				-0.4
2,880,384	-				-0.9
2,880,389	+				-0.4
2,880,439	+		PGA1_c27640	0.13	-2.6
2,880,485	+		PGA1_c27640	0.21	-2.1
2,880,505	+		PGA1_c27640	0.24	+1.0
2,880,573	+		PGA1_c27640	0.36	+0.3
2,880,573	+		PGA1_c27640	0.36	-0.9
2,880,573	+		PGA1_c27640	0.36	+0.3
2,880,573	+		PGA1_c27640	0.36	-0.7
2,880,581	-		PGA1_c27640	0.37	+0.4
2,880,581	-		PGA1_c27640	0.37	+0.4
2,880,581	-		PGA1_c27640	0.37	+0.7
2,880,581	-		PGA1_c27640	0.37	+2.2
2,880,581	-		PGA1_c27640	0.37	-0.6
2,880,581	-		PGA1_c27640	0.37	+1.0
2,880,581	-		PGA1_c27640	0.37	+0.4
2,880,581	-		PGA1_c27640	0.37	+0.4
2,880,581	-		PGA1_c27640	0.37	+0.0
2,880,581	-		PGA1_c27640	0.37	-0.4
2,880,581	-		PGA1_c27640	0.37	+0.8
2,880,581	-		PGA1_c27640	0.37	+0.6
2,880,585	-		PGA1_c27640	0.38	-2.1
2,880,590	-		PGA1_c27640	0.39	-1.1
2,880,692	+		PGA1_c27640	0.56	-0.1
2,880,699	+		PGA1_c27640	0.57	-0.1
2,880,707	-		PGA1_c27640	0.58	-0.7
2,880,709	+		PGA1_c27640	0.59	+0.9
2,880,709	+		PGA1_c27640	0.59	-0.6
2,880,709	+		PGA1_c27640	0.59	+0.4
2,880,717	-		PGA1_c27640	0.60	-0.1
2,880,722	-		PGA1_c27640	0.61	+1.6
2,880,759	+		PGA1_c27640	0.67	-0.6
2,880,759	+		PGA1_c27640	0.67	+0.1
2,880,761	+		PGA1_c27640	0.67	+0.1
2,880,767	-		PGA1_c27640	0.68	-0.4
2,880,767	-		PGA1_c27640	0.68	-0.3
2,880,836	+		PGA1_c27640	0.80	-0.7
2,880,860	+		PGA1_c27640	0.84	+0.7
2,880,879	+		PGA1_c27640	0.87	+1.4
2,880,889	+		PGA1_c27640	0.89	+0.2
2,880,957	-				+0.4
2,880,974	+				+0.4
2,880,982	-				-0.0
2,880,982	-				+0.2
2,881,022	-				-0.1
2,881,032	-				-1.7
2,881,032	-				+0.0
2,881,039	-				+0.3
2,881,049	-				+0.5
2,881,203	+				-0.1
2,881,204	+				+1.4
2,881,204	+				+1.3
2,881,224	+				+0.3
2,881,224	+				-1.0
2,881,224	+				-0.1
2,881,225	-				+0.4
2,881,353	+		PGA1_c27650	0.13	+0.7
2,881,356	+		PGA1_c27650	0.13	-0.1
2,881,356	+		PGA1_c27650	0.13	+0.7
2,881,421	-		PGA1_c27650	0.15	-0.9
2,881,462	+		PGA1_c27650	0.17	+0.3
2,881,495	-		PGA1_c27650	0.18	+1.3
2,881,528	+		PGA1_c27650	0.19	-1.1
2,881,566	-		PGA1_c27650	0.20	+1.2
2,881,573	+		PGA1_c27650	0.20	-0.9
2,881,694	-		PGA1_c27650	0.24	-1.1
2,881,746	+		PGA1_c27650	0.26	-0.5
2,881,746	+		PGA1_c27650	0.26	+0.2
2,881,779	-		PGA1_c27650	0.27	+0.9
2,881,779	-		PGA1_c27650	0.27	+0.3
2,881,803	-		PGA1_c27650	0.28	-0.1
2,881,838	-		PGA1_c27650	0.29	-0.5
2,881,858	+		PGA1_c27650	0.30	+1.1
2,881,858	-		PGA1_c27650	0.30	+0.1
2,881,866	-		PGA1_c27650	0.30	-2.4
2,881,896	+		PGA1_c27650	0.31	+2.9
2,881,904	-		PGA1_c27650	0.31	-0.5
2,881,907	+		PGA1_c27650	0.32	+0.1
2,881,919	+		PGA1_c27650	0.32	-0.2
2,881,927	-		PGA1_c27650	0.32	-1.4
2,881,938	+		PGA1_c27650	0.33	-0.0
2,881,946	-		PGA1_c27650	0.33	+0.1
2,881,960	-		PGA1_c27650	0.33	+0.2
2,881,987	+		PGA1_c27650	0.34	+0.7
2,881,990	-		PGA1_c27650	0.34	+0.5
2,881,996	+		PGA1_c27650	0.35	-0.5
2,882,034	+		PGA1_c27650	0.36	-0.4
2,882,043	+		PGA1_c27650	0.36	+0.5
2,882,099	+		PGA1_c27650	0.38	+0.5
2,882,107	-		PGA1_c27650	0.38	-2.0
2,882,118	-		PGA1_c27650	0.39	-0.2
2,882,120	+		PGA1_c27650	0.39	-0.7
2,882,121	-		PGA1_c27650	0.39	-1.0
2,882,128	-		PGA1_c27650	0.39	-0.1
2,882,128	-		PGA1_c27650	0.39	+0.3
2,882,289	+		PGA1_c27650	0.44	+1.5
2,882,323	+		PGA1_c27650	0.46	-0.3
2,882,334	+		PGA1_c27650	0.46	-0.9
2,882,390	-		PGA1_c27650	0.48	-0.9
2,882,451	+		PGA1_c27650	0.50	-1.4
2,882,469	-		PGA1_c27650	0.50	+0.5
2,882,482	+		PGA1_c27650	0.51	+0.4
2,882,490	+		PGA1_c27650	0.51	-0.5
2,882,505	+		PGA1_c27650	0.52	+0.9
2,882,507	+		PGA1_c27650	0.52	+1.5
2,882,515	-		PGA1_c27650	0.52	+0.2
2,882,517	+		PGA1_c27650	0.52	-1.6
2,882,525	-		PGA1_c27650	0.52	-0.9
2,882,599	-		PGA1_c27650	0.55	-0.5
2,882,612	+		PGA1_c27650	0.55	+0.2
2,882,620	-		PGA1_c27650	0.56	-0.2
2,882,657	+		PGA1_c27650	0.57	-1.7
2,882,657	+		PGA1_c27650	0.57	-0.5
2,882,665	-		PGA1_c27650	0.57	+3.0
2,882,668	+		PGA1_c27650	0.57	+0.5
2,882,668	+		PGA1_c27650	0.57	-1.4
2,882,676	-		PGA1_c27650	0.57	+0.1
2,882,695	-		PGA1_c27650	0.58	-1.0
2,882,695	-		PGA1_c27650	0.58	-0.9
2,882,695	-		PGA1_c27650	0.58	-0.6
2,882,695	-		PGA1_c27650	0.58	-0.7
2,882,697	+		PGA1_c27650	0.58	+1.9
2,882,697	+		PGA1_c27650	0.58	-0.5
2,882,705	-		PGA1_c27650	0.58	-1.5
2,882,705	-		PGA1_c27650	0.58	-0.5
2,882,705	-		PGA1_c27650	0.58	-0.6
2,882,705	-		PGA1_c27650	0.58	+0.7
2,882,825	-		PGA1_c27650	0.62	-1.7
2,882,863	-		PGA1_c27650	0.64	-0.4
2,882,893	+		PGA1_c27650	0.65	+0.8
2,882,927	+		PGA1_c27650	0.66	+1.0
2,883,001	+		PGA1_c27650	0.68	+0.5
2,883,006	+		PGA1_c27650	0.69	-0.1
2,883,009	-		PGA1_c27650	0.69	+1.6
2,883,009	-		PGA1_c27650	0.69	+0.5
2,883,014	+		PGA1_c27650	0.69	-0.5
2,883,014	+		PGA1_c27650	0.69	-0.8
2,883,080	+		PGA1_c27650	0.71	+0.2
2,883,080	+		PGA1_c27650	0.71	+1.1
2,883,080	+		PGA1_c27650	0.71	-0.5
2,883,080	+		PGA1_c27650	0.71	+0.8
2,883,080	+		PGA1_c27650	0.71	-0.7
2,883,083	-		PGA1_c27650	0.71	-0.5
2,883,083	-		PGA1_c27650	0.71	+0.6
2,883,088	-		PGA1_c27650	0.71	+0.8
2,883,088	-		PGA1_c27650	0.71	+1.1
2,883,088	-		PGA1_c27650	0.71	-0.1
2,883,088	-		PGA1_c27650	0.71	-0.6
2,883,088	-		PGA1_c27650	0.71	-0.5
2,883,088	-		PGA1_c27650	0.71	-2.7
2,883,088	-		PGA1_c27650	0.71	-2.4
2,883,088	-		PGA1_c27650	0.71	-1.3
2,883,088	-		PGA1_c27650	0.71	+0.3
2,883,088	-		PGA1_c27650	0.71	+0.1
2,883,088	-		PGA1_c27650	0.71	-1.8
2,883,088	-		PGA1_c27650	0.71	-0.5
2,883,088	-		PGA1_c27650	0.71	+0.9
2,883,088	-		PGA1_c27650	0.71	-0.7
2,883,139	-		PGA1_c27650	0.73	-0.4
2,883,192	-		PGA1_c27650	0.75	+1.5
2,883,263	+		PGA1_c27650	0.77	+0.8
2,883,392	+		PGA1_c27650	0.81	+0.5
2,883,410	+		PGA1_c27650	0.82	-0.4
2,883,481	+		PGA1_c27650	0.84	-0.1
2,883,494	-		PGA1_c27650	0.85	+0.5
2,883,516	+		PGA1_c27650	0.86	-0.6
2,883,516	+		PGA1_c27650	0.86	-0.1
2,883,519	+		PGA1_c27650	0.86	+0.6
2,883,519	+		PGA1_c27650	0.86	-0.5
2,883,527	-		PGA1_c27650	0.86	+1.2
2,883,556	-		PGA1_c27650	0.87	-2.2
2,883,577	+		PGA1_c27650	0.88	+1.3
2,883,584	+		PGA1_c27650	0.88	+0.5
2,883,592	-		PGA1_c27650	0.88	+0.2
2,883,605	+		PGA1_c27650	0.89	+0.9
2,883,641	+		PGA1_c27650	0.90	-0.3
2,883,699	+				+0.6
2,883,699	+				-0.9
2,883,701	+				-0.1
2,883,756	+				-1.1
2,883,770	+				-0.9
2,883,831	+				-0.2
2,883,831	+				+0.5
2,883,839	-				-1.7
2,883,839	-				+1.1
2,883,839	-				-0.2
2,883,839	-				+0.5
2,883,858	+				-1.0
2,883,864	-				+1.0
2,883,866	-				-1.0
2,883,878	+				-0.8
2,883,886	-				-1.5
2,883,888	+				-0.8
2,883,888	+				-0.1
2,883,888	+				+0.6
2,883,896	-				+0.2
2,883,969	-				-0.3
2,883,969	-				-0.3
2,884,013	+				-2.5
2,884,029	-				-0.7
2,884,102	+		PGA1_c27660	0.28	-0.0
2,884,174	+		PGA1_c27660	0.65	-0.0
2,884,174	+		PGA1_c27660	0.65	+1.5
2,884,219	-		PGA1_c27660	0.89	-0.7
2,884,301	-				+1.5
2,884,311	+				+0.1
2,884,368	-		PGA1_c27670	0.11	+0.0
2,884,378	+		PGA1_c27670	0.12	+0.5
2,884,401	-		PGA1_c27670	0.16	-0.3
2,884,488	+		PGA1_c27670	0.29	-1.2
2,884,496	-		PGA1_c27670	0.31	-0.9
2,884,569	-		PGA1_c27670	0.42	+0.2
2,884,582	-		PGA1_c27670	0.44	-1.9
2,884,657	+		PGA1_c27670	0.56	-0.3
2,884,659	-		PGA1_c27670	0.56	+1.5
2,884,665	-		PGA1_c27670	0.57	+0.5
2,884,665	-		PGA1_c27670	0.57	-0.5
2,884,665	-		PGA1_c27670	0.57	+1.0
2,884,665	-		PGA1_c27670	0.57	+1.2