Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2604 and HP15_2605 are separated by 67 nucleotides HP15_2605 and HP15_2606 overlap by 1 nucleotides
HP15_2604: HP15_2604 - protein containing DUF1329, at 2,753,978 to 2,755,195
_2604
HP15_2605: HP15_2605 - regulatory protein, LysR, at 2,755,263 to 2,756,933
_2605
HP15_2606: HP15_2606 - transporter, at 2,756,933 to 2,759,323
_2606
Position (kb)
2755
2756
2757 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2754.429 kb on + strand, within HP15_2604 at 2754.437 kb on - strand, within HP15_2604 at 2754.486 kb on + strand, within HP15_2604 at 2754.881 kb on - strand, within HP15_2604 at 2754.884 kb on + strand, within HP15_2604 at 2754.892 kb on - strand, within HP15_2604 at 2755.030 kb on - strand, within HP15_2604 at 2755.117 kb on + strand at 2755.123 kb on + strand at 2755.131 kb on - strand at 2755.199 kb on - strand at 2755.206 kb on - strand at 2755.346 kb on - strand at 2755.346 kb on - strand at 2755.411 kb on + strand at 2755.455 kb on + strand, within HP15_2605 at 2755.455 kb on + strand, within HP15_2605 at 2755.463 kb on - strand, within HP15_2605 at 2755.622 kb on + strand, within HP15_2605 at 2755.707 kb on - strand, within HP15_2605 at 2755.812 kb on - strand, within HP15_2605 at 2755.822 kb on - strand, within HP15_2605 at 2755.835 kb on - strand, within HP15_2605 at 2755.841 kb on - strand, within HP15_2605 at 2755.854 kb on - strand, within HP15_2605 at 2755.942 kb on - strand, within HP15_2605 at 2756.038 kb on - strand, within HP15_2605 at 2756.056 kb on + strand, within HP15_2605 at 2756.056 kb on + strand, within HP15_2605 at 2756.107 kb on + strand, within HP15_2605 at 2756.115 kb on - strand, within HP15_2605 at 2756.156 kb on - strand, within HP15_2605 at 2756.241 kb on + strand, within HP15_2605 at 2756.433 kb on - strand, within HP15_2605 at 2756.515 kb on - strand, within HP15_2605 at 2756.515 kb on - strand, within HP15_2605 at 2756.582 kb on + strand, within HP15_2605 at 2756.665 kb on - strand, within HP15_2605 at 2756.676 kb on + strand, within HP15_2605 at 2756.694 kb on - strand, within HP15_2605 at 2756.700 kb on + strand, within HP15_2605 at 2756.749 kb on - strand, within HP15_2605 at 2756.754 kb on + strand, within HP15_2605 at 2756.826 kb on - strand at 2756.851 kb on + strand at 2756.854 kb on - strand at 2756.854 kb on - strand at 2756.859 kb on - strand at 2756.866 kb on - strand at 2756.956 kb on + strand at 2757.152 kb on + strand at 2757.286 kb on - strand, within HP15_2606 at 2757.292 kb on - strand, within HP15_2606 at 2757.296 kb on + strand, within HP15_2606 at 2757.362 kb on + strand, within HP15_2606 at 2757.374 kb on + strand, within HP15_2606 at 2757.471 kb on + strand, within HP15_2606 at 2757.676 kb on + strand, within HP15_2606 at 2757.814 kb on + strand, within HP15_2606 at 2757.883 kb on - strand, within HP15_2606 at 2757.932 kb on + strand, within HP15_2606
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 2,754,429 + HP15_2604 0.37 -0.5 2,754,437 - HP15_2604 0.38 +1.2 2,754,486 + HP15_2604 0.42 -1.5 2,754,881 - HP15_2604 0.74 +0.5 2,754,884 + HP15_2604 0.74 +0.8 2,754,892 - HP15_2604 0.75 -1.9 2,755,030 - HP15_2604 0.86 -0.5 2,755,117 + +1.2 2,755,123 + +0.1 2,755,131 - +0.3 2,755,199 - -0.8 2,755,206 - -2.4 2,755,346 - +0.2 2,755,346 - +0.6 2,755,411 + +0.1 2,755,455 + HP15_2605 0.11 -0.1 2,755,455 + HP15_2605 0.11 -0.5 2,755,463 - HP15_2605 0.12 +0.1 2,755,622 + HP15_2605 0.21 +0.9 2,755,707 - HP15_2605 0.27 +0.2 2,755,812 - HP15_2605 0.33 +0.5 2,755,822 - HP15_2605 0.33 +0.1 2,755,835 - HP15_2605 0.34 +0.2 2,755,841 - HP15_2605 0.35 -1.7 2,755,854 - HP15_2605 0.35 +0.1 2,755,942 - HP15_2605 0.41 -3.2 2,756,038 - HP15_2605 0.46 +0.7 2,756,056 + HP15_2605 0.47 -1.4 2,756,056 + HP15_2605 0.47 +0.6 2,756,107 + HP15_2605 0.51 -0.1 2,756,115 - HP15_2605 0.51 +0.8 2,756,156 - HP15_2605 0.53 -0.1 2,756,241 + HP15_2605 0.59 -1.9 2,756,433 - HP15_2605 0.70 +0.4 2,756,515 - HP15_2605 0.75 -0.2 2,756,515 - HP15_2605 0.75 +0.3 2,756,582 + HP15_2605 0.79 -1.1 2,756,665 - HP15_2605 0.84 -0.1 2,756,676 + HP15_2605 0.85 +2.1 2,756,694 - HP15_2605 0.86 +0.7 2,756,700 + HP15_2605 0.86 +0.1 2,756,749 - HP15_2605 0.89 -0.2 2,756,754 + HP15_2605 0.89 -0.1 2,756,826 - -1.6 2,756,851 + +0.6 2,756,854 - -0.3 2,756,854 - +0.9 2,756,859 - -0.4 2,756,866 - +0.2 2,756,956 + -0.8 2,757,152 + -0.7 2,757,286 - HP15_2606 0.15 -0.5 2,757,292 - HP15_2606 0.15 +0.6 2,757,296 + HP15_2606 0.15 +1.0 2,757,362 + HP15_2606 0.18 +0.2 2,757,374 + HP15_2606 0.18 -0.7 2,757,471 + HP15_2606 0.23 -1.0 2,757,676 + HP15_2606 0.31 +0.0 2,757,814 + HP15_2606 0.37 +0.8 2,757,883 - HP15_2606 0.40 +0.0 2,757,932 + HP15_2606 0.42 +0.8
Or see this region's nucleotide sequence