Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2602 and HP15_2603 are separated by 4 nucleotides HP15_2603 and HP15_2604 are separated by 157 nucleotides
HP15_2602: HP15_2602 - hydantoin utilization protein B, at 2,749,989 to 2,751,860
_2602
HP15_2603: HP15_2603 - hydantoin utilization protein A, at 2,751,865 to 2,753,820
_2603
HP15_2604: HP15_2604 - protein containing DUF1329, at 2,753,978 to 2,755,195
_2604
Position (kb)
2751
2752
2753
2754 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2750.868 kb on + strand, within HP15_2602 at 2750.868 kb on + strand, within HP15_2602 at 2750.868 kb on + strand, within HP15_2602 at 2750.871 kb on - strand, within HP15_2602 at 2750.918 kb on + strand, within HP15_2602 at 2751.008 kb on - strand, within HP15_2602 at 2751.022 kb on - strand, within HP15_2602 at 2751.076 kb on + strand, within HP15_2602 at 2751.183 kb on + strand, within HP15_2602 at 2751.183 kb on + strand, within HP15_2602 at 2751.207 kb on + strand, within HP15_2602 at 2751.207 kb on + strand, within HP15_2602 at 2751.244 kb on + strand, within HP15_2602 at 2751.262 kb on - strand, within HP15_2602 at 2751.435 kb on + strand, within HP15_2602 at 2751.443 kb on - strand, within HP15_2602 at 2751.484 kb on + strand, within HP15_2602 at 2751.510 kb on - strand, within HP15_2602 at 2751.521 kb on + strand, within HP15_2602 at 2751.529 kb on - strand, within HP15_2602 at 2751.529 kb on - strand, within HP15_2602 at 2751.569 kb on - strand, within HP15_2602 at 2751.712 kb on - strand at 2751.712 kb on - strand at 2751.794 kb on - strand at 2751.876 kb on - strand at 2751.986 kb on + strand at 2752.009 kb on - strand at 2752.009 kb on - strand at 2752.038 kb on + strand at 2752.038 kb on + strand at 2752.233 kb on + strand, within HP15_2603 at 2752.425 kb on + strand, within HP15_2603 at 2752.446 kb on + strand, within HP15_2603 at 2752.567 kb on + strand, within HP15_2603 at 2752.575 kb on - strand, within HP15_2603 at 2752.613 kb on + strand, within HP15_2603 at 2752.631 kb on - strand, within HP15_2603 at 2752.654 kb on - strand, within HP15_2603 at 2752.709 kb on + strand, within HP15_2603 at 2752.711 kb on - strand, within HP15_2603 at 2752.717 kb on - strand, within HP15_2603 at 2752.744 kb on + strand, within HP15_2603 at 2752.809 kb on - strand, within HP15_2603 at 2752.826 kb on + strand, within HP15_2603 at 2752.864 kb on + strand, within HP15_2603 at 2752.869 kb on + strand, within HP15_2603 at 2752.890 kb on + strand, within HP15_2603 at 2752.890 kb on + strand, within HP15_2603 at 2752.893 kb on - strand, within HP15_2603 at 2752.998 kb on + strand, within HP15_2603 at 2753.001 kb on - strand, within HP15_2603 at 2753.024 kb on - strand, within HP15_2603 at 2753.074 kb on + strand, within HP15_2603 at 2753.074 kb on + strand, within HP15_2603 at 2753.082 kb on - strand, within HP15_2603 at 2753.082 kb on - strand, within HP15_2603 at 2753.086 kb on + strand, within HP15_2603 at 2753.171 kb on - strand, within HP15_2603 at 2753.411 kb on - strand, within HP15_2603 at 2753.470 kb on - strand, within HP15_2603 at 2753.579 kb on + strand, within HP15_2603 at 2753.671 kb on + strand at 2753.672 kb on - strand at 2753.848 kb on - strand at 2753.886 kb on + strand at 2753.887 kb on + strand at 2753.913 kb on + strand at 2753.921 kb on - strand at 2753.921 kb on - strand at 2753.932 kb on + strand at 2753.940 kb on - strand at 2753.961 kb on - strand at 2754.003 kb on - strand at 2754.101 kb on + strand, within HP15_2604 at 2754.160 kb on + strand, within HP15_2604 at 2754.160 kb on + strand, within HP15_2604 at 2754.168 kb on - strand, within HP15_2604 at 2754.213 kb on + strand, within HP15_2604 at 2754.260 kb on + strand, within HP15_2604 at 2754.429 kb on + strand, within HP15_2604 at 2754.437 kb on - strand, within HP15_2604 at 2754.486 kb on + strand, within HP15_2604
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 2,750,868 + HP15_2602 0.47 +1.5 2,750,868 + HP15_2602 0.47 +0.1 2,750,868 + HP15_2602 0.47 +0.8 2,750,871 - HP15_2602 0.47 +0.4 2,750,918 + HP15_2602 0.50 -0.7 2,751,008 - HP15_2602 0.54 +0.7 2,751,022 - HP15_2602 0.55 -0.6 2,751,076 + HP15_2602 0.58 +0.6 2,751,183 + HP15_2602 0.64 +0.0 2,751,183 + HP15_2602 0.64 -1.2 2,751,207 + HP15_2602 0.65 -1.1 2,751,207 + HP15_2602 0.65 +0.4 2,751,244 + HP15_2602 0.67 +0.4 2,751,262 - HP15_2602 0.68 +0.7 2,751,435 + HP15_2602 0.77 +0.5 2,751,443 - HP15_2602 0.78 -1.1 2,751,484 + HP15_2602 0.80 -2.1 2,751,510 - HP15_2602 0.81 +0.6 2,751,521 + HP15_2602 0.82 +1.5 2,751,529 - HP15_2602 0.82 +0.4 2,751,529 - HP15_2602 0.82 +0.8 2,751,569 - HP15_2602 0.84 +1.4 2,751,712 - +0.2 2,751,712 - +0.2 2,751,794 - +0.5 2,751,876 - -1.3 2,751,986 + -0.3 2,752,009 - -0.4 2,752,009 - +1.0 2,752,038 + -0.0 2,752,038 + +0.6 2,752,233 + HP15_2603 0.19 +0.3 2,752,425 + HP15_2603 0.29 +0.6 2,752,446 + HP15_2603 0.30 -0.1 2,752,567 + HP15_2603 0.36 +0.0 2,752,575 - HP15_2603 0.36 +0.4 2,752,613 + HP15_2603 0.38 +1.2 2,752,631 - HP15_2603 0.39 +0.0 2,752,654 - HP15_2603 0.40 -0.1 2,752,709 + HP15_2603 0.43 +0.1 2,752,711 - HP15_2603 0.43 +1.1 2,752,717 - HP15_2603 0.44 +0.0 2,752,744 + HP15_2603 0.45 -0.4 2,752,809 - HP15_2603 0.48 +0.1 2,752,826 + HP15_2603 0.49 +0.1 2,752,864 + HP15_2603 0.51 -1.1 2,752,869 + HP15_2603 0.51 +0.4 2,752,890 + HP15_2603 0.52 -3.3 2,752,890 + HP15_2603 0.52 +0.6 2,752,893 - HP15_2603 0.53 +0.6 2,752,998 + HP15_2603 0.58 +0.4 2,753,001 - HP15_2603 0.58 +0.6 2,753,024 - HP15_2603 0.59 +0.5 2,753,074 + HP15_2603 0.62 +1.5 2,753,074 + HP15_2603 0.62 +0.4 2,753,082 - HP15_2603 0.62 -1.0 2,753,082 - HP15_2603 0.62 +1.1 2,753,086 + HP15_2603 0.62 -0.8 2,753,171 - HP15_2603 0.67 -1.4 2,753,411 - HP15_2603 0.79 -2.1 2,753,470 - HP15_2603 0.82 +0.2 2,753,579 + HP15_2603 0.88 +0.8 2,753,671 + +0.1 2,753,672 - -0.2 2,753,848 - +0.8 2,753,886 + +0.9 2,753,887 + -2.4 2,753,913 + -0.5 2,753,921 - -0.4 2,753,921 - +0.0 2,753,932 + -0.5 2,753,940 - +0.8 2,753,961 - +0.2 2,754,003 - -1.4 2,754,101 + HP15_2604 0.10 +0.3 2,754,160 + HP15_2604 0.15 -1.0 2,754,160 + HP15_2604 0.15 +0.2 2,754,168 - HP15_2604 0.16 +0.1 2,754,213 + HP15_2604 0.19 -0.1 2,754,260 + HP15_2604 0.23 -0.7 2,754,429 + HP15_2604 0.37 -0.5 2,754,437 - HP15_2604 0.38 +1.2 2,754,486 + HP15_2604 0.42 -1.5
Or see this region's nucleotide sequence