Strain Fitness in Marinobacter adhaerens HP15 around HP15_2416

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2415 and HP15_2416 are separated by 95 nucleotidesHP15_2416 and HP15_2417 are separated by 112 nucleotidesHP15_2417 and HP15_2418 are separated by 180 nucleotides HP15_2415: HP15_2415 - sensory box sensor histidine kinase/response regulator, at 2,549,872 to 2,552,223 _2415 HP15_2416: HP15_2416 - zinc-binding protein, at 2,552,319 to 2,552,474 _2416 HP15_2417: HP15_2417 - YfaZ family protein, at 2,552,587 to 2,553,144 _2417 HP15_2418: HP15_2418 - conserved hypothetical protein, at 2,553,325 to 2,555,457 _2418 Position (kb) 2552 2553Strain fitness (log2 ratio) -1 0 1 2 3at 2551.405 kb on - strand, within HP15_2415at 2551.607 kb on - strand, within HP15_2415at 2551.860 kb on + strand, within HP15_2415at 2551.936 kb on + strand, within HP15_2415at 2552.004 kb on - strandat 2552.023 kb on - strandat 2552.298 kb on + strandat 2552.364 kb on - strand, within HP15_2416at 2552.448 kb on - strand, within HP15_2416at 2552.468 kb on + strandat 2552.476 kb on - strandat 2552.733 kb on + strand, within HP15_2417at 2552.862 kb on - strand, within HP15_2417at 2553.309 kb on + strandat 2553.310 kb on - strandat 2553.310 kb on - strandat 2553.319 kb on + strandat 2553.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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2,551,405 - HP15_2415 0.65 -0.7
2,551,607 - HP15_2415 0.74 -0.8
2,551,860 + HP15_2415 0.85 -0.5
2,551,936 + HP15_2415 0.88 +0.3
2,552,004 - +0.0
2,552,023 - +0.3
2,552,298 + +0.9
2,552,364 - HP15_2416 0.29 +0.9
2,552,448 - HP15_2416 0.83 +0.7
2,552,468 + +0.4
2,552,476 - -0.4
2,552,733 + HP15_2417 0.26 -0.9
2,552,862 - HP15_2417 0.49 +3.3
2,553,309 + +1.0
2,553,310 - +0.4
2,553,310 - +0.1
2,553,319 + +0.4
2,553,390 - +0.8

Or see this region's nucleotide sequence