Strain Fitness in Marinobacter adhaerens HP15 around HP15_2341

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2340 and HP15_2341 are separated by 74 nucleotidesHP15_2341 and HP15_2342 are separated by 291 nucleotides HP15_2340: HP15_2340 - protein containing DUF490, at 2,458,278 to 2,461,961 _2340 HP15_2341: HP15_2341 - surface antigen (D15), at 2,462,036 to 2,463,685 _2341 HP15_2342: HP15_2342 - conserved hypothetical protein, membrane, at 2,463,977 to 2,464,984 _2342 Position (kb) 2462 2463 2464Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2461.050 kb on + strand, within HP15_2340at 2461.078 kb on - strand, within HP15_2340at 2461.108 kb on - strand, within HP15_2340at 2461.135 kb on - strand, within HP15_2340at 2461.156 kb on - strand, within HP15_2340at 2461.194 kb on + strand, within HP15_2340at 2461.195 kb on - strand, within HP15_2340at 2461.216 kb on + strand, within HP15_2340at 2461.234 kb on - strand, within HP15_2340at 2461.529 kb on + strand, within HP15_2340at 2461.529 kb on + strand, within HP15_2340at 2461.537 kb on - strand, within HP15_2340at 2461.610 kb on + strandat 2461.625 kb on + strandat 2461.676 kb on - strandat 2461.804 kb on + strandat 2461.978 kb on - strandat 2462.020 kb on - strandat 2462.034 kb on + strandat 2462.041 kb on + strandat 2462.041 kb on + strandat 2462.049 kb on - strandat 2462.098 kb on - strandat 2462.143 kb on - strandat 2462.345 kb on - strand, within HP15_2341at 2462.394 kb on - strand, within HP15_2341at 2462.409 kb on + strand, within HP15_2341at 2462.417 kb on - strand, within HP15_2341at 2462.463 kb on + strand, within HP15_2341at 2462.463 kb on + strand, within HP15_2341at 2462.463 kb on + strand, within HP15_2341at 2462.471 kb on - strand, within HP15_2341at 2462.471 kb on - strand, within HP15_2341at 2462.471 kb on - strand, within HP15_2341at 2462.501 kb on + strand, within HP15_2341at 2462.501 kb on + strand, within HP15_2341at 2462.756 kb on - strand, within HP15_2341at 2462.756 kb on - strand, within HP15_2341at 2462.786 kb on + strand, within HP15_2341at 2462.791 kb on + strand, within HP15_2341at 2462.876 kb on + strand, within HP15_2341at 2462.997 kb on - strand, within HP15_2341at 2463.024 kb on - strand, within HP15_2341at 2463.068 kb on + strand, within HP15_2341at 2463.076 kb on - strand, within HP15_2341at 2463.076 kb on - strand, within HP15_2341at 2463.177 kb on - strand, within HP15_2341at 2463.183 kb on - strand, within HP15_2341at 2463.304 kb on + strand, within HP15_2341at 2463.314 kb on + strand, within HP15_2341at 2463.322 kb on - strand, within HP15_2341at 2463.322 kb on - strand, within HP15_2341at 2463.322 kb on - strand, within HP15_2341at 2463.369 kb on + strand, within HP15_2341at 2463.431 kb on - strand, within HP15_2341at 2463.481 kb on + strand, within HP15_2341at 2463.481 kb on + strand, within HP15_2341at 2463.481 kb on + strand, within HP15_2341at 2463.489 kb on - strand, within HP15_2341at 2463.489 kb on - strand, within HP15_2341at 2463.522 kb on - strandat 2463.713 kb on - strandat 2463.844 kb on - strandat 2463.891 kb on + strandat 2463.899 kb on - strandat 2463.899 kb on - strandat 2463.899 kb on - strandat 2463.901 kb on + strandat 2463.901 kb on + strandat 2463.901 kb on + strandat 2463.901 kb on + strandat 2463.901 kb on + strandat 2463.901 kb on + strandat 2463.909 kb on - strandat 2463.909 kb on - strandat 2464.094 kb on + strand, within HP15_2342at 2464.110 kb on - strand, within HP15_2342at 2464.267 kb on - strand, within HP15_2342at 2464.304 kb on - strand, within HP15_2342at 2464.317 kb on - strand, within HP15_2342at 2464.408 kb on + strand, within HP15_2342at 2464.470 kb on + strand, within HP15_2342at 2464.494 kb on - strand, within HP15_2342

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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2,461,050 + HP15_2340 0.75 -0.5
2,461,078 - HP15_2340 0.76 -0.4
2,461,108 - HP15_2340 0.77 -0.3
2,461,135 - HP15_2340 0.78 -2.6
2,461,156 - HP15_2340 0.78 +0.1
2,461,194 + HP15_2340 0.79 +0.4
2,461,195 - HP15_2340 0.79 -0.9
2,461,216 + HP15_2340 0.80 +0.4
2,461,234 - HP15_2340 0.80 -0.1
2,461,529 + HP15_2340 0.88 +0.4
2,461,529 + HP15_2340 0.88 -0.1
2,461,537 - HP15_2340 0.88 -1.2
2,461,610 + +0.2
2,461,625 + -1.7
2,461,676 - +0.2
2,461,804 + +0.4
2,461,978 - +0.2
2,462,020 - +1.3
2,462,034 + +2.3
2,462,041 + -0.8
2,462,041 + +0.1
2,462,049 - +0.6
2,462,098 - +0.0
2,462,143 - -0.2
2,462,345 - HP15_2341 0.19 -0.4
2,462,394 - HP15_2341 0.22 +0.0
2,462,409 + HP15_2341 0.23 -0.1
2,462,417 - HP15_2341 0.23 +0.4
2,462,463 + HP15_2341 0.26 +0.7
2,462,463 + HP15_2341 0.26 +0.4
2,462,463 + HP15_2341 0.26 +0.2
2,462,471 - HP15_2341 0.26 +1.0
2,462,471 - HP15_2341 0.26 -0.6
2,462,471 - HP15_2341 0.26 +0.1
2,462,501 + HP15_2341 0.28 -0.4
2,462,501 + HP15_2341 0.28 -1.1
2,462,756 - HP15_2341 0.44 -0.1
2,462,756 - HP15_2341 0.44 +0.4
2,462,786 + HP15_2341 0.45 +2.6
2,462,791 + HP15_2341 0.46 +1.0
2,462,876 + HP15_2341 0.51 +0.5
2,462,997 - HP15_2341 0.58 +0.7
2,463,024 - HP15_2341 0.60 -1.7
2,463,068 + HP15_2341 0.63 +0.3
2,463,076 - HP15_2341 0.63 -0.1
2,463,076 - HP15_2341 0.63 +0.1
2,463,177 - HP15_2341 0.69 +0.6
2,463,183 - HP15_2341 0.70 +1.3
2,463,304 + HP15_2341 0.77 +0.2
2,463,314 + HP15_2341 0.77 +0.2
2,463,322 - HP15_2341 0.78 +0.4
2,463,322 - HP15_2341 0.78 +0.6
2,463,322 - HP15_2341 0.78 -1.2
2,463,369 + HP15_2341 0.81 -1.1
2,463,431 - HP15_2341 0.85 +0.4
2,463,481 + HP15_2341 0.88 +0.3
2,463,481 + HP15_2341 0.88 +0.8
2,463,481 + HP15_2341 0.88 +0.1
2,463,489 - HP15_2341 0.88 +0.4
2,463,489 - HP15_2341 0.88 -1.0
2,463,522 - +0.0
2,463,713 - -0.9
2,463,844 - +0.1
2,463,891 + +0.7
2,463,899 - -1.3
2,463,899 - +0.1
2,463,899 - +0.4
2,463,901 + -3.0
2,463,901 + +0.6
2,463,901 + -0.5
2,463,901 + +2.0
2,463,901 + +0.3
2,463,901 + +0.6
2,463,909 - -1.0
2,463,909 - -1.4
2,464,094 + HP15_2342 0.12 -1.6
2,464,110 - HP15_2342 0.13 -3.2
2,464,267 - HP15_2342 0.29 +0.3
2,464,304 - HP15_2342 0.32 +1.1
2,464,317 - HP15_2342 0.34 +0.4
2,464,408 + HP15_2342 0.43 -1.0
2,464,470 + HP15_2342 0.49 +0.3
2,464,494 - HP15_2342 0.51 +1.6

Or see this region's nucleotide sequence