Strain Fitness in Marinobacter adhaerens HP15 around HP15_2204

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2203 and HP15_2204 are separated by 90 nucleotidesHP15_2204 and HP15_2205 are separated by 130 nucleotides HP15_2203: HP15_2203 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 2,320,356 to 2,322,950 _2203 HP15_2204: HP15_2204 - membrane protein containing DUF81, at 2,323,041 to 2,323,787 _2204 HP15_2205: HP15_2205 - sodium/solute symporter, at 2,323,918 to 2,325,363 _2205 Position (kb) 2323 2324Strain fitness (log2 ratio) -1 0 1at 2323.027 kb on + strandat 2323.087 kb on - strandat 2323.094 kb on - strandat 2323.174 kb on - strand, within HP15_2204at 2323.536 kb on + strand, within HP15_2204at 2323.613 kb on - strand, within HP15_2204at 2323.613 kb on - strand, within HP15_2204at 2323.791 kb on + strandat 2323.879 kb on + strandat 2324.019 kb on + strandat 2324.027 kb on - strandat 2324.044 kb on + strandat 2324.397 kb on - strand, within HP15_2205at 2324.621 kb on + strand, within HP15_2205at 2324.636 kb on + strand, within HP15_2205at 2324.636 kb on + strand, within HP15_2205at 2324.644 kb on - strand, within HP15_2205at 2324.706 kb on - strand, within HP15_2205at 2324.750 kb on - strand, within HP15_2205at 2324.751 kb on - strand, within HP15_2205

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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2,323,027 + +0.3
2,323,087 - +0.5
2,323,094 - +0.1
2,323,174 - HP15_2204 0.18 -1.2
2,323,536 + HP15_2204 0.66 +0.4
2,323,613 - HP15_2204 0.77 -0.6
2,323,613 - HP15_2204 0.77 -1.0
2,323,791 + +1.0
2,323,879 + +0.7
2,324,019 + -0.3
2,324,027 - +1.1
2,324,044 + -0.6
2,324,397 - HP15_2205 0.33 +0.8
2,324,621 + HP15_2205 0.49 +0.5
2,324,636 + HP15_2205 0.50 +0.0
2,324,636 + HP15_2205 0.50 -0.2
2,324,644 - HP15_2205 0.50 -1.6
2,324,706 - HP15_2205 0.54 +0.1
2,324,750 - HP15_2205 0.58 -0.7
2,324,751 - HP15_2205 0.58 +0.5

Or see this region's nucleotide sequence