Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1849 and HP15_1850 are separated by 158 nucleotides HP15_1850 and HP15_1851 are separated by 326 nucleotides HP15_1851 and HP15_1852 are separated by 65 nucleotides HP15_1852 and HP15_1853 are separated by 190 nucleotides
HP15_1849: HP15_1849 - conserved hypothetical protein, secreted, at 1,948,215 to 1,949,051
_1849
HP15_1850: HP15_1850 - conserved hypothetical protein, at 1,949,210 to 1,949,623
_1850
HP15_1851: HP15_1851 - para-aminobenzoate synthase, subunit I, at 1,949,950 to 1,951,341
_1851
HP15_1852: HP15_1852 - homoserine kinase, at 1,951,407 to 1,952,063
_1852
HP15_1853: HP15_1853 - phosphoadenosine phosphosulfate reductase, at 1,952,254 to 1,952,976
_1853
Position (kb)
1949
1950
1951
1952 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1948.965 kb on + strand, within HP15_1849 at 1948.973 kb on - strand at 1949.126 kb on + strand at 1949.134 kb on - strand at 1949.140 kb on - strand at 1949.283 kb on - strand, within HP15_1850 at 1949.319 kb on + strand, within HP15_1850 at 1949.429 kb on + strand, within HP15_1850 at 1949.509 kb on + strand, within HP15_1850 at 1949.517 kb on - strand, within HP15_1850 at 1949.523 kb on + strand, within HP15_1850 at 1949.671 kb on + strand at 1949.679 kb on - strand at 1949.965 kb on - strand at 1949.987 kb on + strand at 1949.994 kb on - strand at 1949.995 kb on - strand at 1950.153 kb on + strand, within HP15_1851 at 1950.346 kb on + strand, within HP15_1851 at 1950.354 kb on - strand, within HP15_1851 at 1950.354 kb on - strand, within HP15_1851 at 1950.361 kb on + strand, within HP15_1851 at 1950.408 kb on - strand, within HP15_1851 at 1950.439 kb on - strand, within HP15_1851 at 1950.444 kb on - strand, within HP15_1851 at 1950.476 kb on - strand, within HP15_1851 at 1950.793 kb on + strand, within HP15_1851 at 1950.796 kb on - strand, within HP15_1851 at 1950.833 kb on + strand, within HP15_1851 at 1951.024 kb on - strand, within HP15_1851 at 1951.024 kb on - strand, within HP15_1851 at 1951.062 kb on + strand, within HP15_1851 at 1951.167 kb on - strand, within HP15_1851 at 1951.211 kb on - strand at 1951.232 kb on + strand at 1951.343 kb on - strand at 1951.371 kb on - strand at 1951.461 kb on + strand at 1952.116 kb on - strand at 1952.213 kb on + strand at 1952.251 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 1,948,965 + HP15_1849 0.90 +0.4 1,948,973 - -0.8 1,949,126 + -1.3 1,949,134 - -0.2 1,949,140 - -1.8 1,949,283 - HP15_1850 0.18 +1.0 1,949,319 + HP15_1850 0.26 +0.1 1,949,429 + HP15_1850 0.53 -0.4 1,949,509 + HP15_1850 0.72 +0.2 1,949,517 - HP15_1850 0.74 -0.6 1,949,523 + HP15_1850 0.76 +0.1 1,949,671 + +0.4 1,949,679 - -1.7 1,949,965 - -0.7 1,949,987 + +0.4 1,949,994 - +0.1 1,949,995 - -0.6 1,950,153 + HP15_1851 0.15 +0.8 1,950,346 + HP15_1851 0.28 +0.1 1,950,354 - HP15_1851 0.29 -2.0 1,950,354 - HP15_1851 0.29 +0.0 1,950,361 + HP15_1851 0.30 -1.1 1,950,408 - HP15_1851 0.33 -0.5 1,950,439 - HP15_1851 0.35 +0.8 1,950,444 - HP15_1851 0.35 -1.8 1,950,476 - HP15_1851 0.38 -0.5 1,950,793 + HP15_1851 0.61 -0.9 1,950,796 - HP15_1851 0.61 -2.0 1,950,833 + HP15_1851 0.63 -2.9 1,951,024 - HP15_1851 0.77 -0.8 1,951,024 - HP15_1851 0.77 -1.6 1,951,062 + HP15_1851 0.80 -0.4 1,951,167 - HP15_1851 0.87 -1.6 1,951,211 - -1.2 1,951,232 + -1.4 1,951,343 - -0.2 1,951,371 - -1.0 1,951,461 + +0.7 1,952,116 - +1.5 1,952,213 + -1.1 1,952,251 + +0.5
Or see this region's nucleotide sequence