Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18440

Experiment: No vitamins t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	No vitamins t1
1,923,881	+		PGA1_c18430	0.50	+0.0
1,923,889	-		PGA1_c18430	0.50	+0.2
1,923,906	-		PGA1_c18430	0.51	-0.9
1,923,917	+		PGA1_c18430	0.52	-0.4
1,923,917	+		PGA1_c18430	0.52	+1.0
1,923,944	+		PGA1_c18430	0.53	+0.9
1,923,944	+		PGA1_c18430	0.53	+0.2
1,923,962	-		PGA1_c18430	0.54	-0.0
1,923,991	+		PGA1_c18430	0.55	-0.2
1,924,047	-		PGA1_c18430	0.58	-1.2
1,924,049	+		PGA1_c18430	0.58	-0.7
1,924,076	-		PGA1_c18430	0.60	-1.2
1,924,076	-		PGA1_c18430	0.60	+0.5
1,924,126	+		PGA1_c18430	0.62	+1.2
1,924,132	-		PGA1_c18430	0.63	-1.6
1,924,163	+		PGA1_c18430	0.64	+1.4
1,924,172	+		PGA1_c18430	0.65	+0.4
1,924,203	-		PGA1_c18430	0.66	-0.6
1,924,259	-		PGA1_c18430	0.69	-0.5
1,924,272	-		PGA1_c18430	0.70	-0.2
1,924,287	+		PGA1_c18430	0.71	-0.0
1,924,309	-		PGA1_c18430	0.72	+2.1
1,924,309	-		PGA1_c18430	0.72	+0.4
1,924,309	-		PGA1_c18430	0.72	-0.5
1,924,357	+		PGA1_c18430	0.74	+0.2
1,924,357	+		PGA1_c18430	0.74	+1.4
1,924,365	-		PGA1_c18430	0.75	+1.0
1,924,367	+		PGA1_c18430	0.75	-1.2
1,924,367	+		PGA1_c18430	0.75	-0.5
1,924,367	+		PGA1_c18430	0.75	-0.9
1,924,455	+		PGA1_c18430	0.79	-1.2
1,924,513	+		PGA1_c18430	0.82	-0.0
1,924,524	+		PGA1_c18430	0.83	+1.4
1,924,532	-		PGA1_c18430	0.83	-0.4
1,924,537	-		PGA1_c18430	0.83	-1.2
1,924,578	+		PGA1_c18430	0.86	+0.9
1,924,586	-		PGA1_c18430	0.86	+0.2
1,924,605	-		PGA1_c18430	0.87	+0.4
1,924,613	+		PGA1_c18430	0.87	+1.1
1,924,695	+				-0.3
1,924,695	+				+0.1
1,924,710	+				-0.2
1,924,720	+				-0.3
1,924,766	+				-1.2
1,924,774	-				+2.4
1,924,774	-				+0.4
1,924,815	+				-0.5
1,924,846	+				-0.8
1,924,863	+				+1.2
1,924,871	-				-0.9
1,924,952	+		PGA1_c18440	0.17	+1.4
1,924,960	-		PGA1_c18440	0.19	-0.8
1,924,979	-		PGA1_c18440	0.22	-0.9
1,925,033	+		PGA1_c18440	0.32	-0.6
1,925,041	-		PGA1_c18440	0.33	-0.9
1,925,045	+		PGA1_c18440	0.34	-0.6
1,925,053	-		PGA1_c18440	0.35	+0.2
1,925,065	+		PGA1_c18440	0.37	+0.4
1,925,149	+		PGA1_c18440	0.52	-1.7
1,925,160	+		PGA1_c18440	0.54	-2.2
1,925,160	+		PGA1_c18440	0.54	-0.8
1,925,160	+		PGA1_c18440	0.54	-0.5
1,925,160	+		PGA1_c18440	0.54	-0.8
1,925,168	-		PGA1_c18440	0.56	-1.0
1,925,168	-		PGA1_c18440	0.56	-0.7
1,925,192	+		PGA1_c18440	0.60	+0.2
1,925,198	-		PGA1_c18440	0.61	-1.5
1,925,208	-		PGA1_c18440	0.63	-0.9
1,925,208	-		PGA1_c18440	0.63	+0.4
1,925,233	-		PGA1_c18440	0.67	+0.6
1,925,238	+		PGA1_c18440	0.68	+0.4
1,925,251	+		PGA1_c18440	0.70	+0.1
1,925,259	+		PGA1_c18440	0.72	-0.9
1,925,259	+		PGA1_c18440	0.72	+0.5
1,925,259	-		PGA1_c18440	0.72	-1.2
1,925,259	-		PGA1_c18440	0.72	-0.2
1,925,259	-		PGA1_c18440	0.72	+0.6
1,925,285	-		PGA1_c18440	0.76	-0.6
1,925,299	+		PGA1_c18440	0.79	+1.4
1,925,302	-		PGA1_c18440	0.80	-0.4
1,925,324	+		PGA1_c18440	0.83	+0.1
1,925,324	+		PGA1_c18440	0.83	-0.1
1,925,332	-		PGA1_c18440	0.85	-0.0
1,925,333	+		PGA1_c18440	0.85	-0.7
1,925,341	+		PGA1_c18440	0.86	-0.2
1,925,349	+		PGA1_c18440	0.88	-0.9
1,925,349	+		PGA1_c18440	0.88	+0.6
1,925,349	-		PGA1_c18440	0.88	+0.1
1,925,356	-		PGA1_c18440	0.89	+0.2
1,925,357	-		PGA1_c18440	0.89	-0.3
1,925,357	-		PGA1_c18440	0.89	+0.1
1,925,368	-				-0.6
1,925,378	-				-1.0
1,925,448	+				-1.1
1,925,530	+				+0.1
1,925,538	+				-0.1
1,925,538	+				+1.0
1,925,538	+				-0.6
1,925,546	-				+0.2
1,925,546	-				-1.5
1,925,571	+				-0.6
1,925,587	-				-0.7
1,925,593	+				-1.4
1,925,597	-				-2.3
1,925,600	+				+1.4
1,925,601	-				+0.1
1,925,601	-				-0.4
1,925,608	-				+2.4
1,925,608	-				+0.9
1,925,630	+				-1.8
1,925,636	-		PGA1_c18450	0.11	+0.2
1,925,645	+		PGA1_c18450	0.13	+0.5
1,925,677	+		PGA1_c18450	0.21	-0.4
1,925,732	+		PGA1_c18450	0.36	+0.1
1,925,732	+		PGA1_c18450	0.36	+0.8
1,925,732	+		PGA1_c18450	0.36	+0.8
1,925,732	+		PGA1_c18450	0.36	-0.9
1,925,732	+		PGA1_c18450	0.36	+0.6
1,925,737	+		PGA1_c18450	0.37	+0.2
1,925,740	-		PGA1_c18450	0.38	+0.4
1,925,745	-		PGA1_c18450	0.39	+0.7
1,925,775	+		PGA1_c18450	0.47	-0.1
1,925,783	-		PGA1_c18450	0.49	+0.4
1,925,831	+		PGA1_c18450	0.62	-1.4
1,925,831	+		PGA1_c18450	0.62	+2.4
1,925,831	+		PGA1_c18450	0.62	+2.6
1,925,837	-		PGA1_c18450	0.64	+1.8
1,925,839	-		PGA1_c18450	0.64	-0.2
1,925,844	-		PGA1_c18450	0.66	+0.7
1,925,848	+		PGA1_c18450	0.67	-0.1
1,925,856	-		PGA1_c18450	0.69	-0.2
1,925,856	-		PGA1_c18450	0.69	+0.2
1,925,886	-		PGA1_c18450	0.77	+0.4
1,925,896	-		PGA1_c18450	0.79	+1.0
1,925,909	+		PGA1_c18450	0.83	-2.1
1,925,923	+		PGA1_c18450	0.87	-1.6
1,925,931	-		PGA1_c18450	0.89	-1.1
1,925,931	-		PGA1_c18450	0.89	-1.1
1,925,971	+				-0.1
1,925,984	+				-1.7
1,926,063	+		PGA1_c18460	0.12	+0.7
1,926,068	+		PGA1_c18460	0.13	-0.2
1,926,068	+		PGA1_c18460	0.13	+1.2
1,926,076	-		PGA1_c18460	0.14	+0.4
1,926,114	-		PGA1_c18460	0.19	-0.0
1,926,126	-		PGA1_c18460	0.20	-1.6
1,926,126	-		PGA1_c18460	0.20	-1.1
1,926,131	-		PGA1_c18460	0.21	+0.1
1,926,131	-		PGA1_c18460	0.21	+0.9
1,926,138	+		PGA1_c18460	0.22	-2.1
1,926,138	+		PGA1_c18460	0.22	+0.4
1,926,138	+		PGA1_c18460	0.22	-0.6
1,926,141	-		PGA1_c18460	0.22	+1.1
1,926,146	-		PGA1_c18460	0.23	-0.6
1,926,148	+		PGA1_c18460	0.23	-1.8
1,926,148	+		PGA1_c18460	0.23	+0.4
1,926,148	+		PGA1_c18460	0.23	-0.1
1,926,156	-		PGA1_c18460	0.24	-1.3
1,926,156	-		PGA1_c18460	0.24	-0.2
1,926,158	+		PGA1_c18460	0.25	-0.4
1,926,158	+		PGA1_c18460	0.25	+0.2
1,926,158	+		PGA1_c18460	0.25	+0.1
1,926,201	-		PGA1_c18460	0.30	+0.6
1,926,201	-		PGA1_c18460	0.30	+0.3
1,926,231	+		PGA1_c18460	0.34	-1.3
1,926,266	-		PGA1_c18460	0.39	+0.4
1,926,274	+		PGA1_c18460	0.40	+0.4
1,926,279	+		PGA1_c18460	0.41	+0.5
1,926,296	-		PGA1_c18460	0.43	-0.2
1,926,321	+		PGA1_c18460	0.46	+0.7
1,926,340	+		PGA1_c18460	0.49	-0.1
1,926,369	+		PGA1_c18460	0.53	-0.2