Strain Fitness in Marinobacter adhaerens HP15 around HP15_1763

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1762 and HP15_1763 are separated by 60 nucleotidesHP15_1763 and HP15_1764 are separated by 14 nucleotides HP15_1762: HP15_1762 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 1,860,350 to 1,861,417 _1762 HP15_1763: HP15_1763 - anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 1,861,478 to 1,861,969 _1763 HP15_1764: HP15_1764 - two-component response regulator, at 1,861,984 to 1,862,925 _1764 Position (kb) 1861 1862Strain fitness (log2 ratio) -3 -2 -1 0 1at 1861.450 kb on - strandat 1861.465 kb on - strandat 1861.549 kb on - strand, within HP15_1763at 1861.841 kb on - strand, within HP15_1763at 1862.257 kb on - strand, within HP15_1764at 1862.312 kb on - strand, within HP15_1764at 1862.422 kb on - strand, within HP15_1764at 1862.551 kb on - strand, within HP15_1764at 1862.573 kb on + strand, within HP15_1764at 1862.578 kb on + strand, within HP15_1764at 1862.680 kb on - strand, within HP15_1764at 1862.730 kb on + strand, within HP15_1764at 1862.778 kb on + strand, within HP15_1764at 1862.928 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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1,861,450 - -0.1
1,861,465 - -0.3
1,861,549 - HP15_1763 0.14 -2.4
1,861,841 - HP15_1763 0.74 -1.0
1,862,257 - HP15_1764 0.29 -0.4
1,862,312 - HP15_1764 0.35 -1.3
1,862,422 - HP15_1764 0.46 -1.0
1,862,551 - HP15_1764 0.60 -1.1
1,862,573 + HP15_1764 0.63 -2.3
1,862,578 + HP15_1764 0.63 -2.7
1,862,680 - HP15_1764 0.74 -1.6
1,862,730 + HP15_1764 0.79 -2.9
1,862,778 + HP15_1764 0.84 -2.5
1,862,928 - -1.6

Or see this region's nucleotide sequence