Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1565 and HP15_1566 are separated by 84 nucleotides HP15_1566 and HP15_1567 are separated by 99 nucleotides HP15_1567 and HP15_1568 overlap by 17 nucleotides
HP15_1565: HP15_1565 - methyl-accepting chemotaxis sensory transducer, at 1,644,922 to 1,646,541
_1565
HP15_1566: HP15_1566 - conserved hypothetical protein, at 1,646,626 to 1,646,877
_1566
HP15_1567: HP15_1567 - two component transcriptional regulator, LuxR family, at 1,646,977 to 1,647,639
_1567
HP15_1568: HP15_1568 - excinuclease ABC subunit C, at 1,647,623 to 1,649,485
_1568
Position (kb)
1646
1647 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1645.645 kb on + strand, within HP15_1565 at 1645.740 kb on + strand, within HP15_1565 at 1645.758 kb on + strand, within HP15_1565 at 1645.817 kb on - strand, within HP15_1565 at 1645.851 kb on + strand, within HP15_1565 at 1646.017 kb on - strand, within HP15_1565 at 1646.017 kb on - strand, within HP15_1565 at 1646.065 kb on + strand, within HP15_1565 at 1646.106 kb on - strand, within HP15_1565 at 1646.144 kb on - strand, within HP15_1565 at 1646.167 kb on - strand, within HP15_1565 at 1646.178 kb on - strand, within HP15_1565 at 1646.191 kb on + strand, within HP15_1565 at 1646.191 kb on + strand, within HP15_1565 at 1646.191 kb on + strand, within HP15_1565 at 1646.191 kb on + strand, within HP15_1565 at 1646.199 kb on - strand, within HP15_1565 at 1646.199 kb on - strand, within HP15_1565 at 1646.291 kb on - strand, within HP15_1565 at 1646.295 kb on + strand, within HP15_1565 at 1646.295 kb on + strand, within HP15_1565 at 1646.295 kb on + strand, within HP15_1565 at 1646.303 kb on - strand, within HP15_1565 at 1646.738 kb on + strand, within HP15_1566 at 1646.741 kb on - strand, within HP15_1566 at 1646.757 kb on + strand, within HP15_1566 at 1646.772 kb on + strand, within HP15_1566 at 1646.780 kb on - strand, within HP15_1566 at 1646.780 kb on - strand, within HP15_1566 at 1646.795 kb on - strand, within HP15_1566 at 1646.800 kb on - strand, within HP15_1566 at 1646.877 kb on + strand at 1646.895 kb on + strand at 1646.982 kb on - strand at 1647.010 kb on - strand at 1647.498 kb on - strand, within HP15_1567 at 1647.498 kb on - strand, within HP15_1567 at 1647.509 kb on + strand, within HP15_1567
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 1,645,645 + HP15_1565 0.45 +0.2 1,645,740 + HP15_1565 0.50 +0.4 1,645,758 + HP15_1565 0.52 +0.7 1,645,817 - HP15_1565 0.55 +0.2 1,645,851 + HP15_1565 0.57 +0.2 1,646,017 - HP15_1565 0.68 -0.8 1,646,017 - HP15_1565 0.68 +0.1 1,646,065 + HP15_1565 0.71 +0.6 1,646,106 - HP15_1565 0.73 -1.2 1,646,144 - HP15_1565 0.75 +0.1 1,646,167 - HP15_1565 0.77 +0.3 1,646,178 - HP15_1565 0.78 -1.4 1,646,191 + HP15_1565 0.78 +0.0 1,646,191 + HP15_1565 0.78 +0.7 1,646,191 + HP15_1565 0.78 +0.4 1,646,191 + HP15_1565 0.78 +1.1 1,646,199 - HP15_1565 0.79 +0.1 1,646,199 - HP15_1565 0.79 -0.2 1,646,291 - HP15_1565 0.85 +0.6 1,646,295 + HP15_1565 0.85 +0.3 1,646,295 + HP15_1565 0.85 -0.2 1,646,295 + HP15_1565 0.85 -1.9 1,646,303 - HP15_1565 0.85 +0.4 1,646,738 + HP15_1566 0.44 +0.1 1,646,741 - HP15_1566 0.46 +3.6 1,646,757 + HP15_1566 0.52 +0.3 1,646,772 + HP15_1566 0.58 -0.7 1,646,780 - HP15_1566 0.61 +0.5 1,646,780 - HP15_1566 0.61 +0.1 1,646,795 - HP15_1566 0.67 -0.6 1,646,800 - HP15_1566 0.69 -0.1 1,646,877 + -0.3 1,646,895 + +0.5 1,646,982 - -1.6 1,647,010 - -0.1 1,647,498 - HP15_1567 0.79 +0.8 1,647,498 - HP15_1567 0.79 +0.9 1,647,509 + HP15_1567 0.80 +0.3
Or see this region's nucleotide sequence