Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16070

Experiment: No vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16050 and PGA1_c16060 are separated by 26 nucleotidesPGA1_c16060 and PGA1_c16070 are separated by 324 nucleotidesPGA1_c16070 and PGA1_c16080 are separated by 70 nucleotides PGA1_c16050: PGA1_c16050 - 5,10-methylenetetrahydrofolate reductase, at 1,665,163 to 1,666,095 _c16050 PGA1_c16060: PGA1_c16060 - hypothetical protein, at 1,666,122 to 1,666,418 _c16060 PGA1_c16070: PGA1_c16070 - guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase-like protein, at 1,666,743 to 1,667,855 _c16070 PGA1_c16080: PGA1_c16080 - ribosomal RNA large subunit methyltransferase J, at 1,667,926 to 1,668,681 _c16080 Position (kb) 1666 1667 1668Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1665.785 kb on + strand, within PGA1_c16050at 1665.932 kb on + strand, within PGA1_c16050at 1665.992 kb on + strand, within PGA1_c16050at 1666.056 kb on - strandat 1666.061 kb on - strandat 1666.104 kb on + strandat 1666.152 kb on + strand, within PGA1_c16060at 1666.152 kb on + strand, within PGA1_c16060at 1666.160 kb on - strand, within PGA1_c16060at 1666.161 kb on + strand, within PGA1_c16060at 1666.218 kb on - strand, within PGA1_c16060at 1666.229 kb on - strand, within PGA1_c16060at 1666.248 kb on + strand, within PGA1_c16060at 1666.305 kb on + strand, within PGA1_c16060at 1666.379 kb on - strand, within PGA1_c16060at 1666.395 kb on + strandat 1666.420 kb on + strandat 1666.506 kb on - strandat 1666.555 kb on - strandat 1666.555 kb on - strandat 1666.555 kb on - strandat 1666.560 kb on - strandat 1666.562 kb on + strandat 1666.591 kb on - strandat 1666.623 kb on - strandat 1666.668 kb on + strandat 1666.668 kb on + strandat 1666.678 kb on - strandat 1666.687 kb on - strandat 1666.687 kb on - strandat 1666.689 kb on - strandat 1666.711 kb on - strandat 1666.726 kb on + strandat 1666.765 kb on - strandat 1666.765 kb on - strandat 1666.795 kb on + strandat 1666.805 kb on + strandat 1666.952 kb on + strand, within PGA1_c16070at 1667.041 kb on - strand, within PGA1_c16070at 1667.336 kb on - strand, within PGA1_c16070at 1667.499 kb on - strand, within PGA1_c16070at 1667.577 kb on + strand, within PGA1_c16070at 1667.594 kb on + strand, within PGA1_c16070at 1667.712 kb on + strand, within PGA1_c16070at 1667.866 kb on + strandat 1667.868 kb on + strandat 1668.670 kb on + strandat 1668.717 kb on + strandat 1668.720 kb on - strandat 1668.722 kb on + strandat 1668.730 kb on - strandat 1668.762 kb on + strandat 1668.770 kb on - strandat 1668.806 kb on - strandat 1668.842 kb on - strandat 1668.850 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t1
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1,665,785 + PGA1_c16050 0.67 -2.4
1,665,932 + PGA1_c16050 0.82 -2.4
1,665,992 + PGA1_c16050 0.89 -3.2
1,666,056 - -3.3
1,666,061 - -2.0
1,666,104 + -1.4
1,666,152 + PGA1_c16060 0.10 -0.6
1,666,152 + PGA1_c16060 0.10 -0.6
1,666,160 - PGA1_c16060 0.13 -1.2
1,666,161 + PGA1_c16060 0.13 -0.6
1,666,218 - PGA1_c16060 0.32 -3.7
1,666,229 - PGA1_c16060 0.36 -1.0
1,666,248 + PGA1_c16060 0.42 -3.9
1,666,305 + PGA1_c16060 0.62 +0.4
1,666,379 - PGA1_c16060 0.87 -1.7
1,666,395 + -2.3
1,666,420 + -2.0
1,666,506 - -2.8
1,666,555 - -0.2
1,666,555 - -0.3
1,666,555 - +0.7
1,666,560 - -0.2
1,666,562 + -0.7
1,666,591 - -1.0
1,666,623 - -0.2
1,666,668 + -0.5
1,666,668 + -0.6
1,666,678 - -0.2
1,666,687 - +0.3
1,666,687 - -0.3
1,666,689 - -0.1
1,666,711 - -0.3
1,666,726 + -1.2
1,666,765 - -0.2
1,666,765 - -2.6
1,666,795 + -0.6
1,666,805 + -0.6
1,666,952 + PGA1_c16070 0.19 -1.4
1,667,041 - PGA1_c16070 0.27 -2.2
1,667,336 - PGA1_c16070 0.53 -2.2
1,667,499 - PGA1_c16070 0.68 -1.1
1,667,577 + PGA1_c16070 0.75 -1.3
1,667,594 + PGA1_c16070 0.76 -0.9
1,667,712 + PGA1_c16070 0.87 -1.9
1,667,866 + +0.4
1,667,868 + -0.9
1,668,670 + +1.0
1,668,717 + -0.4
1,668,720 - +0.4
1,668,722 + +1.7
1,668,730 - -1.2
1,668,762 + -0.5
1,668,770 - -0.0
1,668,806 - -0.6
1,668,842 - +0.2
1,668,850 - -0.0

Or see this region's nucleotide sequence