Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1538 and HP15_1539 are separated by 12 nucleotides HP15_1539 and HP15_1540 are separated by 73 nucleotides HP15_1540 and HP15_1541 are separated by 4 nucleotides HP15_1541 and HP15_1542 are separated by 24 nucleotides HP15_1542 and HP15_1543 overlap by 4 nucleotides
HP15_1538: HP15_1538 - conserved hypothetical protein, at 1,622,655 to 1,624,124
_1538
HP15_1539: HP15_1539 - CBS domain containing protein, at 1,624,137 to 1,624,769
_1539
HP15_1540: HP15_1540 - protein YfcK, at 1,624,843 to 1,626,741
_1540
HP15_1541: HP15_1541 - peptidyl-prolyl cis-trans isomerase, cyclophilin type, at 1,626,746 to 1,627,357
_1541
HP15_1542: HP15_1542 - hypothetical protein, at 1,627,382 to 1,627,588
_1542
HP15_1543: HP15_1543 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,627,585 to 1,628,334
_1543
Position (kb)
1624
1625
1626
1627 Strain fitness (log2 ratio)
-2
-1
0
1 at 1623.905 kb on - strand, within HP15_1538 at 1623.986 kb on + strand at 1624.093 kb on - strand at 1624.584 kb on - strand, within HP15_1539 at 1624.699 kb on + strand, within HP15_1539 at 1624.701 kb on - strand, within HP15_1539 at 1624.804 kb on + strand at 1624.964 kb on + strand at 1624.972 kb on - strand at 1624.999 kb on - strand at 1625.148 kb on + strand, within HP15_1540 at 1625.253 kb on + strand, within HP15_1540 at 1625.394 kb on - strand, within HP15_1540 at 1625.489 kb on + strand, within HP15_1540 at 1625.627 kb on - strand, within HP15_1540 at 1625.892 kb on + strand, within HP15_1540 at 1626.121 kb on + strand, within HP15_1540 at 1626.140 kb on + strand, within HP15_1540 at 1626.146 kb on + strand, within HP15_1540 at 1626.146 kb on + strand, within HP15_1540 at 1626.337 kb on + strand, within HP15_1540 at 1626.345 kb on - strand, within HP15_1540 at 1626.345 kb on - strand, within HP15_1540 at 1626.345 kb on - strand, within HP15_1540 at 1626.384 kb on + strand, within HP15_1540 at 1626.417 kb on - strand, within HP15_1540 at 1626.533 kb on - strand, within HP15_1540 at 1626.646 kb on + strand at 1626.697 kb on - strand at 1626.707 kb on - strand at 1626.751 kb on - strand at 1626.858 kb on + strand, within HP15_1541 at 1626.900 kb on - strand, within HP15_1541 at 1627.230 kb on + strand, within HP15_1541 at 1627.247 kb on + strand, within HP15_1541 at 1627.483 kb on - strand, within HP15_1542 at 1627.499 kb on + strand, within HP15_1542 at 1627.665 kb on + strand, within HP15_1543 at 1627.684 kb on - strand, within HP15_1543 at 1627.685 kb on - strand, within HP15_1543 at 1627.740 kb on - strand, within HP15_1543
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 1,623,905 - HP15_1538 0.85 +0.5 1,623,986 + -1.0 1,624,093 - -0.8 1,624,584 - HP15_1539 0.71 +0.4 1,624,699 + HP15_1539 0.89 +0.9 1,624,701 - HP15_1539 0.89 +0.2 1,624,804 + -0.8 1,624,964 + -0.5 1,624,972 - +0.7 1,624,999 - -1.2 1,625,148 + HP15_1540 0.16 +0.2 1,625,253 + HP15_1540 0.22 +0.6 1,625,394 - HP15_1540 0.29 +0.7 1,625,489 + HP15_1540 0.34 +1.0 1,625,627 - HP15_1540 0.41 +0.1 1,625,892 + HP15_1540 0.55 -0.5 1,626,121 + HP15_1540 0.67 -0.0 1,626,140 + HP15_1540 0.68 -2.4 1,626,146 + HP15_1540 0.69 -0.9 1,626,146 + HP15_1540 0.69 -1.1 1,626,337 + HP15_1540 0.79 +0.6 1,626,345 - HP15_1540 0.79 +1.1 1,626,345 - HP15_1540 0.79 +0.2 1,626,345 - HP15_1540 0.79 +0.0 1,626,384 + HP15_1540 0.81 +0.9 1,626,417 - HP15_1540 0.83 +0.6 1,626,533 - HP15_1540 0.89 +0.3 1,626,646 + +0.5 1,626,697 - +0.1 1,626,707 - +0.1 1,626,751 - +0.8 1,626,858 + HP15_1541 0.18 +0.6 1,626,900 - HP15_1541 0.25 -0.4 1,627,230 + HP15_1541 0.79 +1.4 1,627,247 + HP15_1541 0.82 +1.0 1,627,483 - HP15_1542 0.49 -0.2 1,627,499 + HP15_1542 0.57 -0.8 1,627,665 + HP15_1543 0.11 +0.9 1,627,684 - HP15_1543 0.13 -2.6 1,627,685 - HP15_1543 0.13 -0.9 1,627,740 - HP15_1543 0.21 -0.0
Or see this region's nucleotide sequence