Strain Fitness in Marinobacter adhaerens HP15 around HP15_1540

Experiment: Control growth in Pro99_seawater

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1538 and HP15_1539 are separated by 12 nucleotidesHP15_1539 and HP15_1540 are separated by 73 nucleotidesHP15_1540 and HP15_1541 are separated by 4 nucleotidesHP15_1541 and HP15_1542 are separated by 24 nucleotidesHP15_1542 and HP15_1543 overlap by 4 nucleotides HP15_1538: HP15_1538 - conserved hypothetical protein, at 1,622,655 to 1,624,124 _1538 HP15_1539: HP15_1539 - CBS domain containing protein, at 1,624,137 to 1,624,769 _1539 HP15_1540: HP15_1540 - protein YfcK, at 1,624,843 to 1,626,741 _1540 HP15_1541: HP15_1541 - peptidyl-prolyl cis-trans isomerase, cyclophilin type, at 1,626,746 to 1,627,357 _1541 HP15_1542: HP15_1542 - hypothetical protein, at 1,627,382 to 1,627,588 _1542 HP15_1543: HP15_1543 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,627,585 to 1,628,334 _1543 Position (kb) 1624 1625 1626 1627Strain fitness (log2 ratio) -2 -1 0 1at 1623.905 kb on - strand, within HP15_1538at 1623.986 kb on + strandat 1624.093 kb on - strandat 1624.584 kb on - strand, within HP15_1539at 1624.699 kb on + strand, within HP15_1539at 1624.701 kb on - strand, within HP15_1539at 1624.804 kb on + strandat 1624.964 kb on + strandat 1624.972 kb on - strandat 1624.999 kb on - strandat 1625.148 kb on + strand, within HP15_1540at 1625.253 kb on + strand, within HP15_1540at 1625.394 kb on - strand, within HP15_1540at 1625.489 kb on + strand, within HP15_1540at 1625.627 kb on - strand, within HP15_1540at 1625.892 kb on + strand, within HP15_1540at 1626.121 kb on + strand, within HP15_1540at 1626.140 kb on + strand, within HP15_1540at 1626.146 kb on + strand, within HP15_1540at 1626.146 kb on + strand, within HP15_1540at 1626.337 kb on + strand, within HP15_1540at 1626.345 kb on - strand, within HP15_1540at 1626.345 kb on - strand, within HP15_1540at 1626.345 kb on - strand, within HP15_1540at 1626.384 kb on + strand, within HP15_1540at 1626.417 kb on - strand, within HP15_1540at 1626.533 kb on - strand, within HP15_1540at 1626.646 kb on + strandat 1626.697 kb on - strandat 1626.707 kb on - strandat 1626.751 kb on - strandat 1626.858 kb on + strand, within HP15_1541at 1626.900 kb on - strand, within HP15_1541at 1627.230 kb on + strand, within HP15_1541at 1627.247 kb on + strand, within HP15_1541at 1627.483 kb on - strand, within HP15_1542at 1627.499 kb on + strand, within HP15_1542at 1627.665 kb on + strand, within HP15_1543at 1627.684 kb on - strand, within HP15_1543at 1627.685 kb on - strand, within HP15_1543at 1627.740 kb on - strand, within HP15_1543

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
remove
1,623,905 - HP15_1538 0.85 +0.5
1,623,986 + -1.0
1,624,093 - -0.8
1,624,584 - HP15_1539 0.71 +0.4
1,624,699 + HP15_1539 0.89 +0.9
1,624,701 - HP15_1539 0.89 +0.2
1,624,804 + -0.8
1,624,964 + -0.5
1,624,972 - +0.7
1,624,999 - -1.2
1,625,148 + HP15_1540 0.16 +0.2
1,625,253 + HP15_1540 0.22 +0.6
1,625,394 - HP15_1540 0.29 +0.7
1,625,489 + HP15_1540 0.34 +1.0
1,625,627 - HP15_1540 0.41 +0.1
1,625,892 + HP15_1540 0.55 -0.5
1,626,121 + HP15_1540 0.67 -0.0
1,626,140 + HP15_1540 0.68 -2.4
1,626,146 + HP15_1540 0.69 -0.9
1,626,146 + HP15_1540 0.69 -1.1
1,626,337 + HP15_1540 0.79 +0.6
1,626,345 - HP15_1540 0.79 +1.1
1,626,345 - HP15_1540 0.79 +0.2
1,626,345 - HP15_1540 0.79 +0.0
1,626,384 + HP15_1540 0.81 +0.9
1,626,417 - HP15_1540 0.83 +0.6
1,626,533 - HP15_1540 0.89 +0.3
1,626,646 + +0.5
1,626,697 - +0.1
1,626,707 - +0.1
1,626,751 - +0.8
1,626,858 + HP15_1541 0.18 +0.6
1,626,900 - HP15_1541 0.25 -0.4
1,627,230 + HP15_1541 0.79 +1.4
1,627,247 + HP15_1541 0.82 +1.0
1,627,483 - HP15_1542 0.49 -0.2
1,627,499 + HP15_1542 0.57 -0.8
1,627,665 + HP15_1543 0.11 +0.9
1,627,684 - HP15_1543 0.13 -2.6
1,627,685 - HP15_1543 0.13 -0.9
1,627,740 - HP15_1543 0.21 -0.0

Or see this region's nucleotide sequence