Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1412 and HP15_1413 are separated by 144 nucleotides HP15_1413 and HP15_1414 are separated by 16 nucleotides HP15_1414 and HP15_1415 are separated by 10 nucleotides
HP15_1412: HP15_1412 - conserved hypothetical protein, membrane, at 1,491,943 to 1,493,067
_1412
HP15_1413: HP15_1413 - protein containing GCN5-related N-acetyltransferase domain, at 1,493,212 to 1,493,787
_1413
HP15_1414: HP15_1414 - histone deacetylase superfamily protein, at 1,493,804 to 1,494,910
_1414
HP15_1415: HP15_1415 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s), at 1,494,921 to 1,497,551
_1415
Position (kb)
1493
1494
1495 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1492.894 kb on - strand, within HP15_1412 at 1493.104 kb on + strand at 1493.104 kb on + strand at 1493.112 kb on - strand at 1493.169 kb on - strand at 1493.228 kb on - strand at 1493.265 kb on + strand at 1493.564 kb on + strand, within HP15_1413 at 1493.605 kb on + strand, within HP15_1413 at 1493.625 kb on - strand, within HP15_1413 at 1493.650 kb on + strand, within HP15_1413 at 1493.695 kb on + strand, within HP15_1413 at 1493.860 kb on + strand at 1493.954 kb on - strand, within HP15_1414 at 1493.973 kb on - strand, within HP15_1414 at 1494.072 kb on + strand, within HP15_1414 at 1494.162 kb on - strand, within HP15_1414 at 1494.331 kb on + strand, within HP15_1414 at 1494.353 kb on + strand, within HP15_1414 at 1494.361 kb on - strand, within HP15_1414 at 1494.489 kb on + strand, within HP15_1414 at 1494.497 kb on - strand, within HP15_1414 at 1494.499 kb on + strand, within HP15_1414 at 1494.502 kb on - strand, within HP15_1414 at 1494.505 kb on + strand, within HP15_1414 at 1494.583 kb on - strand, within HP15_1414 at 1494.656 kb on + strand, within HP15_1414 at 1494.664 kb on - strand, within HP15_1414 at 1494.730 kb on - strand, within HP15_1414 at 1494.778 kb on + strand, within HP15_1414 at 1494.778 kb on + strand, within HP15_1414 at 1494.786 kb on - strand, within HP15_1414 at 1494.786 kb on - strand, within HP15_1414 at 1494.786 kb on - strand, within HP15_1414 at 1494.786 kb on - strand, within HP15_1414 at 1494.786 kb on - strand, within HP15_1414 at 1494.786 kb on - strand, within HP15_1414 at 1494.786 kb on - strand, within HP15_1414 at 1494.786 kb on - strand, within HP15_1414 at 1494.877 kb on + strand at 1494.907 kb on - strand at 1495.058 kb on + strand at 1495.187 kb on + strand, within HP15_1415 at 1495.195 kb on - strand, within HP15_1415 at 1495.237 kb on - strand, within HP15_1415 at 1495.237 kb on - strand, within HP15_1415 at 1495.315 kb on - strand, within HP15_1415 at 1495.484 kb on - strand, within HP15_1415 at 1495.524 kb on - strand, within HP15_1415 at 1495.529 kb on - strand, within HP15_1415 at 1495.538 kb on + strand, within HP15_1415 at 1495.556 kb on - strand, within HP15_1415 at 1495.560 kb on + strand, within HP15_1415 at 1495.566 kb on - strand, within HP15_1415 at 1495.679 kb on - strand, within HP15_1415 at 1495.679 kb on - strand, within HP15_1415 at 1495.727 kb on - strand, within HP15_1415 at 1495.842 kb on - strand, within HP15_1415
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 1,492,894 - HP15_1412 0.85 -1.3 1,493,104 + +2.3 1,493,104 + +0.9 1,493,112 - -0.3 1,493,169 - -1.8 1,493,228 - -0.1 1,493,265 + -2.3 1,493,564 + HP15_1413 0.61 -0.2 1,493,605 + HP15_1413 0.68 +0.3 1,493,625 - HP15_1413 0.72 -0.1 1,493,650 + HP15_1413 0.76 -0.9 1,493,695 + HP15_1413 0.84 -1.1 1,493,860 + -1.0 1,493,954 - HP15_1414 0.14 +0.7 1,493,973 - HP15_1414 0.15 -0.4 1,494,072 + HP15_1414 0.24 -0.4 1,494,162 - HP15_1414 0.32 +0.1 1,494,331 + HP15_1414 0.48 -0.0 1,494,353 + HP15_1414 0.50 -0.8 1,494,361 - HP15_1414 0.50 +0.1 1,494,489 + HP15_1414 0.62 +0.4 1,494,497 - HP15_1414 0.63 +0.2 1,494,499 + HP15_1414 0.63 +0.7 1,494,502 - HP15_1414 0.63 -1.9 1,494,505 + HP15_1414 0.63 -0.9 1,494,583 - HP15_1414 0.70 +1.1 1,494,656 + HP15_1414 0.77 -0.1 1,494,664 - HP15_1414 0.78 +0.3 1,494,730 - HP15_1414 0.84 +0.2 1,494,778 + HP15_1414 0.88 -0.2 1,494,778 + HP15_1414 0.88 +0.4 1,494,786 - HP15_1414 0.89 -0.2 1,494,786 - HP15_1414 0.89 +1.0 1,494,786 - HP15_1414 0.89 +0.4 1,494,786 - HP15_1414 0.89 +1.3 1,494,786 - HP15_1414 0.89 -0.3 1,494,786 - HP15_1414 0.89 +0.3 1,494,786 - HP15_1414 0.89 -1.2 1,494,786 - HP15_1414 0.89 +0.2 1,494,877 + +0.0 1,494,907 - +0.1 1,495,058 + +1.0 1,495,187 + HP15_1415 0.10 +0.9 1,495,195 - HP15_1415 0.10 -0.7 1,495,237 - HP15_1415 0.12 -2.8 1,495,237 - HP15_1415 0.12 -1.1 1,495,315 - HP15_1415 0.15 -1.3 1,495,484 - HP15_1415 0.21 -0.4 1,495,524 - HP15_1415 0.23 +0.4 1,495,529 - HP15_1415 0.23 -0.3 1,495,538 + HP15_1415 0.23 -0.7 1,495,556 - HP15_1415 0.24 -0.4 1,495,560 + HP15_1415 0.24 -1.5 1,495,566 - HP15_1415 0.25 -1.1 1,495,679 - HP15_1415 0.29 +0.3 1,495,679 - HP15_1415 0.29 +0.2 1,495,727 - HP15_1415 0.31 +0.8 1,495,842 - HP15_1415 0.35 +0.0
Or see this region's nucleotide sequence