Strain Fitness in Marinobacter adhaerens HP15 around HP15_1414

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1412 and HP15_1413 are separated by 144 nucleotidesHP15_1413 and HP15_1414 are separated by 16 nucleotidesHP15_1414 and HP15_1415 are separated by 10 nucleotides HP15_1412: HP15_1412 - conserved hypothetical protein, membrane, at 1,491,943 to 1,493,067 _1412 HP15_1413: HP15_1413 - protein containing GCN5-related N-acetyltransferase domain, at 1,493,212 to 1,493,787 _1413 HP15_1414: HP15_1414 - histone deacetylase superfamily protein, at 1,493,804 to 1,494,910 _1414 HP15_1415: HP15_1415 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s), at 1,494,921 to 1,497,551 _1415 Position (kb) 1493 1494 1495Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1492.894 kb on - strand, within HP15_1412at 1493.104 kb on + strandat 1493.104 kb on + strandat 1493.112 kb on - strandat 1493.169 kb on - strandat 1493.228 kb on - strandat 1493.265 kb on + strandat 1493.564 kb on + strand, within HP15_1413at 1493.605 kb on + strand, within HP15_1413at 1493.625 kb on - strand, within HP15_1413at 1493.650 kb on + strand, within HP15_1413at 1493.695 kb on + strand, within HP15_1413at 1493.860 kb on + strandat 1493.954 kb on - strand, within HP15_1414at 1493.973 kb on - strand, within HP15_1414at 1494.072 kb on + strand, within HP15_1414at 1494.162 kb on - strand, within HP15_1414at 1494.331 kb on + strand, within HP15_1414at 1494.353 kb on + strand, within HP15_1414at 1494.361 kb on - strand, within HP15_1414at 1494.489 kb on + strand, within HP15_1414at 1494.497 kb on - strand, within HP15_1414at 1494.499 kb on + strand, within HP15_1414at 1494.502 kb on - strand, within HP15_1414at 1494.505 kb on + strand, within HP15_1414at 1494.583 kb on - strand, within HP15_1414at 1494.656 kb on + strand, within HP15_1414at 1494.664 kb on - strand, within HP15_1414at 1494.730 kb on - strand, within HP15_1414at 1494.778 kb on + strand, within HP15_1414at 1494.778 kb on + strand, within HP15_1414at 1494.786 kb on - strand, within HP15_1414at 1494.786 kb on - strand, within HP15_1414at 1494.786 kb on - strand, within HP15_1414at 1494.786 kb on - strand, within HP15_1414at 1494.786 kb on - strand, within HP15_1414at 1494.786 kb on - strand, within HP15_1414at 1494.786 kb on - strand, within HP15_1414at 1494.786 kb on - strand, within HP15_1414at 1494.877 kb on + strandat 1494.907 kb on - strandat 1495.058 kb on + strandat 1495.187 kb on + strand, within HP15_1415at 1495.195 kb on - strand, within HP15_1415at 1495.237 kb on - strand, within HP15_1415at 1495.237 kb on - strand, within HP15_1415at 1495.315 kb on - strand, within HP15_1415at 1495.484 kb on - strand, within HP15_1415at 1495.524 kb on - strand, within HP15_1415at 1495.529 kb on - strand, within HP15_1415at 1495.538 kb on + strand, within HP15_1415at 1495.556 kb on - strand, within HP15_1415at 1495.560 kb on + strand, within HP15_1415at 1495.566 kb on - strand, within HP15_1415at 1495.679 kb on - strand, within HP15_1415at 1495.679 kb on - strand, within HP15_1415at 1495.727 kb on - strand, within HP15_1415at 1495.842 kb on - strand, within HP15_1415

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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1,492,894 - HP15_1412 0.85 -1.3
1,493,104 + +2.3
1,493,104 + +0.9
1,493,112 - -0.3
1,493,169 - -1.8
1,493,228 - -0.1
1,493,265 + -2.3
1,493,564 + HP15_1413 0.61 -0.2
1,493,605 + HP15_1413 0.68 +0.3
1,493,625 - HP15_1413 0.72 -0.1
1,493,650 + HP15_1413 0.76 -0.9
1,493,695 + HP15_1413 0.84 -1.1
1,493,860 + -1.0
1,493,954 - HP15_1414 0.14 +0.7
1,493,973 - HP15_1414 0.15 -0.4
1,494,072 + HP15_1414 0.24 -0.4
1,494,162 - HP15_1414 0.32 +0.1
1,494,331 + HP15_1414 0.48 -0.0
1,494,353 + HP15_1414 0.50 -0.8
1,494,361 - HP15_1414 0.50 +0.1
1,494,489 + HP15_1414 0.62 +0.4
1,494,497 - HP15_1414 0.63 +0.2
1,494,499 + HP15_1414 0.63 +0.7
1,494,502 - HP15_1414 0.63 -1.9
1,494,505 + HP15_1414 0.63 -0.9
1,494,583 - HP15_1414 0.70 +1.1
1,494,656 + HP15_1414 0.77 -0.1
1,494,664 - HP15_1414 0.78 +0.3
1,494,730 - HP15_1414 0.84 +0.2
1,494,778 + HP15_1414 0.88 -0.2
1,494,778 + HP15_1414 0.88 +0.4
1,494,786 - HP15_1414 0.89 -0.2
1,494,786 - HP15_1414 0.89 +1.0
1,494,786 - HP15_1414 0.89 +0.4
1,494,786 - HP15_1414 0.89 +1.3
1,494,786 - HP15_1414 0.89 -0.3
1,494,786 - HP15_1414 0.89 +0.3
1,494,786 - HP15_1414 0.89 -1.2
1,494,786 - HP15_1414 0.89 +0.2
1,494,877 + +0.0
1,494,907 - +0.1
1,495,058 + +1.0
1,495,187 + HP15_1415 0.10 +0.9
1,495,195 - HP15_1415 0.10 -0.7
1,495,237 - HP15_1415 0.12 -2.8
1,495,237 - HP15_1415 0.12 -1.1
1,495,315 - HP15_1415 0.15 -1.3
1,495,484 - HP15_1415 0.21 -0.4
1,495,524 - HP15_1415 0.23 +0.4
1,495,529 - HP15_1415 0.23 -0.3
1,495,538 + HP15_1415 0.23 -0.7
1,495,556 - HP15_1415 0.24 -0.4
1,495,560 + HP15_1415 0.24 -1.5
1,495,566 - HP15_1415 0.25 -1.1
1,495,679 - HP15_1415 0.29 +0.3
1,495,679 - HP15_1415 0.29 +0.2
1,495,727 - HP15_1415 0.31 +0.8
1,495,842 - HP15_1415 0.35 +0.0

Or see this region's nucleotide sequence