Strain Fitness in Marinobacter adhaerens HP15 around HP15_1119

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1118 and HP15_1119 overlap by 4 nucleotidesHP15_1119 and HP15_1120 overlap by 29 nucleotidesHP15_1120 and HP15_1121 are separated by 169 nucleotides HP15_1118: HP15_1118 - transporter, AcrB/D/F family, at 1,144,608 to 1,147,646 _1118 HP15_1119: HP15_1119 - efflux transporter, RND family, MFP subunit, at 1,147,643 to 1,148,761 _1119 HP15_1120: HP15_1120 - alpha/beta hydrolase fold protein, at 1,148,733 to 1,149,440 _1120 HP15_1121: HP15_1121 - thioesterase superfamily protein, at 1,149,610 to 1,150,116 _1121 Position (kb) 1147 1148 1149Strain fitness (log2 ratio) -3 -2 -1 0 1at 1146.669 kb on - strand, within HP15_1118at 1146.684 kb on - strand, within HP15_1118at 1146.693 kb on - strand, within HP15_1118at 1146.694 kb on - strand, within HP15_1118at 1146.706 kb on + strand, within HP15_1118at 1146.711 kb on + strand, within HP15_1118at 1146.724 kb on - strand, within HP15_1118at 1146.877 kb on + strand, within HP15_1118at 1146.885 kb on - strand, within HP15_1118at 1146.885 kb on - strand, within HP15_1118at 1146.904 kb on + strand, within HP15_1118at 1146.913 kb on - strand, within HP15_1118at 1147.056 kb on - strand, within HP15_1118at 1147.093 kb on + strand, within HP15_1118at 1147.102 kb on + strand, within HP15_1118at 1147.110 kb on - strand, within HP15_1118at 1147.183 kb on - strand, within HP15_1118at 1147.255 kb on - strand, within HP15_1118at 1147.277 kb on - strand, within HP15_1118at 1147.282 kb on - strand, within HP15_1118at 1147.294 kb on - strand, within HP15_1118at 1147.340 kb on + strand, within HP15_1118at 1147.348 kb on - strandat 1147.348 kb on - strandat 1147.348 kb on - strandat 1147.416 kb on - strandat 1147.455 kb on + strandat 1147.466 kb on + strandat 1147.466 kb on - strandat 1147.514 kb on + strandat 1147.532 kb on + strandat 1147.663 kb on + strandat 1147.684 kb on + strandat 1147.684 kb on + strandat 1147.729 kb on - strandat 1147.736 kb on - strandat 1147.794 kb on + strand, within HP15_1119at 1147.803 kb on + strand, within HP15_1119at 1147.808 kb on + strand, within HP15_1119at 1147.839 kb on + strand, within HP15_1119at 1147.897 kb on + strand, within HP15_1119at 1147.905 kb on - strand, within HP15_1119at 1147.933 kb on + strand, within HP15_1119at 1147.933 kb on + strand, within HP15_1119at 1147.941 kb on - strand, within HP15_1119at 1147.941 kb on - strand, within HP15_1119at 1147.943 kb on + strand, within HP15_1119at 1148.061 kb on - strand, within HP15_1119at 1148.110 kb on + strand, within HP15_1119at 1148.138 kb on - strand, within HP15_1119at 1148.201 kb on + strand, within HP15_1119at 1148.201 kb on + strand, within HP15_1119at 1148.209 kb on - strand, within HP15_1119at 1148.209 kb on - strand, within HP15_1119at 1148.211 kb on + strand, within HP15_1119at 1148.219 kb on - strand, within HP15_1119at 1148.386 kb on - strand, within HP15_1119at 1148.518 kb on - strand, within HP15_1119at 1148.552 kb on + strand, within HP15_1119at 1148.842 kb on + strand, within HP15_1120at 1148.947 kb on + strand, within HP15_1120at 1148.969 kb on + strand, within HP15_1120at 1148.969 kb on + strand, within HP15_1120at 1148.977 kb on - strand, within HP15_1120at 1149.073 kb on - strand, within HP15_1120at 1149.105 kb on - strand, within HP15_1120at 1149.315 kb on - strand, within HP15_1120at 1149.333 kb on - strand, within HP15_1120at 1149.338 kb on + strand, within HP15_1120at 1149.346 kb on - strand, within HP15_1120at 1149.346 kb on - strand, within HP15_1120at 1149.346 kb on - strand, within HP15_1120at 1149.531 kb on - strandat 1149.536 kb on - strandat 1149.621 kb on - strandat 1149.698 kb on + strand, within HP15_1121

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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1,146,669 - HP15_1118 0.68 +1.0
1,146,684 - HP15_1118 0.68 +0.8
1,146,693 - HP15_1118 0.69 -1.3
1,146,694 - HP15_1118 0.69 -0.1
1,146,706 + HP15_1118 0.69 -0.3
1,146,711 + HP15_1118 0.69 -1.9
1,146,724 - HP15_1118 0.70 -0.7
1,146,877 + HP15_1118 0.75 +0.4
1,146,885 - HP15_1118 0.75 +0.8
1,146,885 - HP15_1118 0.75 -1.8
1,146,904 + HP15_1118 0.76 -1.1
1,146,913 - HP15_1118 0.76 -3.0
1,147,056 - HP15_1118 0.81 -0.3
1,147,093 + HP15_1118 0.82 -0.4
1,147,102 + HP15_1118 0.82 +0.4
1,147,110 - HP15_1118 0.82 -0.8
1,147,183 - HP15_1118 0.85 -1.3
1,147,255 - HP15_1118 0.87 +0.1
1,147,277 - HP15_1118 0.88 -1.8
1,147,282 - HP15_1118 0.88 +0.7
1,147,294 - HP15_1118 0.88 -0.5
1,147,340 + HP15_1118 0.90 +0.2
1,147,348 - -0.2
1,147,348 - +0.2
1,147,348 - -0.8
1,147,416 - -0.1
1,147,455 + +0.1
1,147,466 + -0.1
1,147,466 - +0.2
1,147,514 + +0.2
1,147,532 + +0.8
1,147,663 + +0.4
1,147,684 + -2.4
1,147,684 + +0.6
1,147,729 - +0.5
1,147,736 - -1.5
1,147,794 + HP15_1119 0.13 +1.0
1,147,803 + HP15_1119 0.14 -0.1
1,147,808 + HP15_1119 0.15 +0.1
1,147,839 + HP15_1119 0.18 -2.6
1,147,897 + HP15_1119 0.23 +0.1
1,147,905 - HP15_1119 0.23 -0.7
1,147,933 + HP15_1119 0.26 +0.3
1,147,933 + HP15_1119 0.26 -0.3
1,147,941 - HP15_1119 0.27 +0.5
1,147,941 - HP15_1119 0.27 -0.4
1,147,943 + HP15_1119 0.27 -0.4
1,148,061 - HP15_1119 0.37 -0.0
1,148,110 + HP15_1119 0.42 -1.1
1,148,138 - HP15_1119 0.44 -1.8
1,148,201 + HP15_1119 0.50 +0.6
1,148,201 + HP15_1119 0.50 -1.8
1,148,209 - HP15_1119 0.51 -1.0
1,148,209 - HP15_1119 0.51 -0.4
1,148,211 + HP15_1119 0.51 -0.0
1,148,219 - HP15_1119 0.51 +0.1
1,148,386 - HP15_1119 0.66 -1.0
1,148,518 - HP15_1119 0.78 -2.1
1,148,552 + HP15_1119 0.81 +0.8
1,148,842 + HP15_1120 0.15 +0.1
1,148,947 + HP15_1120 0.30 -1.6
1,148,969 + HP15_1120 0.33 +0.3
1,148,969 + HP15_1120 0.33 -0.1
1,148,977 - HP15_1120 0.34 +0.4
1,149,073 - HP15_1120 0.48 +1.2
1,149,105 - HP15_1120 0.53 +0.5
1,149,315 - HP15_1120 0.82 -0.8
1,149,333 - HP15_1120 0.85 -0.2
1,149,338 + HP15_1120 0.85 -1.6
1,149,346 - HP15_1120 0.87 -1.6
1,149,346 - HP15_1120 0.87 +0.5
1,149,346 - HP15_1120 0.87 +0.4
1,149,531 - -0.5
1,149,536 - +0.7
1,149,621 - -1.9
1,149,698 + HP15_1121 0.17 -1.1

Or see this region's nucleotide sequence