Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1118 and HP15_1119 overlap by 4 nucleotides HP15_1119 and HP15_1120 overlap by 29 nucleotides HP15_1120 and HP15_1121 are separated by 169 nucleotides
HP15_1118: HP15_1118 - transporter, AcrB/D/F family, at 1,144,608 to 1,147,646
_1118
HP15_1119: HP15_1119 - efflux transporter, RND family, MFP subunit, at 1,147,643 to 1,148,761
_1119
HP15_1120: HP15_1120 - alpha/beta hydrolase fold protein, at 1,148,733 to 1,149,440
_1120
HP15_1121: HP15_1121 - thioesterase superfamily protein, at 1,149,610 to 1,150,116
_1121
Position (kb)
1147
1148
1149 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1146.669 kb on - strand, within HP15_1118 at 1146.684 kb on - strand, within HP15_1118 at 1146.693 kb on - strand, within HP15_1118 at 1146.694 kb on - strand, within HP15_1118 at 1146.706 kb on + strand, within HP15_1118 at 1146.711 kb on + strand, within HP15_1118 at 1146.724 kb on - strand, within HP15_1118 at 1146.877 kb on + strand, within HP15_1118 at 1146.885 kb on - strand, within HP15_1118 at 1146.885 kb on - strand, within HP15_1118 at 1146.904 kb on + strand, within HP15_1118 at 1146.913 kb on - strand, within HP15_1118 at 1147.056 kb on - strand, within HP15_1118 at 1147.093 kb on + strand, within HP15_1118 at 1147.102 kb on + strand, within HP15_1118 at 1147.110 kb on - strand, within HP15_1118 at 1147.183 kb on - strand, within HP15_1118 at 1147.255 kb on - strand, within HP15_1118 at 1147.277 kb on - strand, within HP15_1118 at 1147.282 kb on - strand, within HP15_1118 at 1147.294 kb on - strand, within HP15_1118 at 1147.340 kb on + strand, within HP15_1118 at 1147.348 kb on - strand at 1147.348 kb on - strand at 1147.348 kb on - strand at 1147.416 kb on - strand at 1147.455 kb on + strand at 1147.466 kb on + strand at 1147.466 kb on - strand at 1147.514 kb on + strand at 1147.532 kb on + strand at 1147.663 kb on + strand at 1147.684 kb on + strand at 1147.684 kb on + strand at 1147.729 kb on - strand at 1147.736 kb on - strand at 1147.794 kb on + strand, within HP15_1119 at 1147.803 kb on + strand, within HP15_1119 at 1147.808 kb on + strand, within HP15_1119 at 1147.839 kb on + strand, within HP15_1119 at 1147.897 kb on + strand, within HP15_1119 at 1147.905 kb on - strand, within HP15_1119 at 1147.933 kb on + strand, within HP15_1119 at 1147.933 kb on + strand, within HP15_1119 at 1147.941 kb on - strand, within HP15_1119 at 1147.941 kb on - strand, within HP15_1119 at 1147.943 kb on + strand, within HP15_1119 at 1148.061 kb on - strand, within HP15_1119 at 1148.110 kb on + strand, within HP15_1119 at 1148.138 kb on - strand, within HP15_1119 at 1148.201 kb on + strand, within HP15_1119 at 1148.201 kb on + strand, within HP15_1119 at 1148.209 kb on - strand, within HP15_1119 at 1148.209 kb on - strand, within HP15_1119 at 1148.211 kb on + strand, within HP15_1119 at 1148.219 kb on - strand, within HP15_1119 at 1148.386 kb on - strand, within HP15_1119 at 1148.518 kb on - strand, within HP15_1119 at 1148.552 kb on + strand, within HP15_1119 at 1148.842 kb on + strand, within HP15_1120 at 1148.947 kb on + strand, within HP15_1120 at 1148.969 kb on + strand, within HP15_1120 at 1148.969 kb on + strand, within HP15_1120 at 1148.977 kb on - strand, within HP15_1120 at 1149.073 kb on - strand, within HP15_1120 at 1149.105 kb on - strand, within HP15_1120 at 1149.315 kb on - strand, within HP15_1120 at 1149.333 kb on - strand, within HP15_1120 at 1149.338 kb on + strand, within HP15_1120 at 1149.346 kb on - strand, within HP15_1120 at 1149.346 kb on - strand, within HP15_1120 at 1149.346 kb on - strand, within HP15_1120 at 1149.531 kb on - strand at 1149.536 kb on - strand at 1149.621 kb on - strand at 1149.698 kb on + strand, within HP15_1121
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 1,146,669 - HP15_1118 0.68 +1.0 1,146,684 - HP15_1118 0.68 +0.8 1,146,693 - HP15_1118 0.69 -1.3 1,146,694 - HP15_1118 0.69 -0.1 1,146,706 + HP15_1118 0.69 -0.3 1,146,711 + HP15_1118 0.69 -1.9 1,146,724 - HP15_1118 0.70 -0.7 1,146,877 + HP15_1118 0.75 +0.4 1,146,885 - HP15_1118 0.75 +0.8 1,146,885 - HP15_1118 0.75 -1.8 1,146,904 + HP15_1118 0.76 -1.1 1,146,913 - HP15_1118 0.76 -3.0 1,147,056 - HP15_1118 0.81 -0.3 1,147,093 + HP15_1118 0.82 -0.4 1,147,102 + HP15_1118 0.82 +0.4 1,147,110 - HP15_1118 0.82 -0.8 1,147,183 - HP15_1118 0.85 -1.3 1,147,255 - HP15_1118 0.87 +0.1 1,147,277 - HP15_1118 0.88 -1.8 1,147,282 - HP15_1118 0.88 +0.7 1,147,294 - HP15_1118 0.88 -0.5 1,147,340 + HP15_1118 0.90 +0.2 1,147,348 - -0.2 1,147,348 - +0.2 1,147,348 - -0.8 1,147,416 - -0.1 1,147,455 + +0.1 1,147,466 + -0.1 1,147,466 - +0.2 1,147,514 + +0.2 1,147,532 + +0.8 1,147,663 + +0.4 1,147,684 + -2.4 1,147,684 + +0.6 1,147,729 - +0.5 1,147,736 - -1.5 1,147,794 + HP15_1119 0.13 +1.0 1,147,803 + HP15_1119 0.14 -0.1 1,147,808 + HP15_1119 0.15 +0.1 1,147,839 + HP15_1119 0.18 -2.6 1,147,897 + HP15_1119 0.23 +0.1 1,147,905 - HP15_1119 0.23 -0.7 1,147,933 + HP15_1119 0.26 +0.3 1,147,933 + HP15_1119 0.26 -0.3 1,147,941 - HP15_1119 0.27 +0.5 1,147,941 - HP15_1119 0.27 -0.4 1,147,943 + HP15_1119 0.27 -0.4 1,148,061 - HP15_1119 0.37 -0.0 1,148,110 + HP15_1119 0.42 -1.1 1,148,138 - HP15_1119 0.44 -1.8 1,148,201 + HP15_1119 0.50 +0.6 1,148,201 + HP15_1119 0.50 -1.8 1,148,209 - HP15_1119 0.51 -1.0 1,148,209 - HP15_1119 0.51 -0.4 1,148,211 + HP15_1119 0.51 -0.0 1,148,219 - HP15_1119 0.51 +0.1 1,148,386 - HP15_1119 0.66 -1.0 1,148,518 - HP15_1119 0.78 -2.1 1,148,552 + HP15_1119 0.81 +0.8 1,148,842 + HP15_1120 0.15 +0.1 1,148,947 + HP15_1120 0.30 -1.6 1,148,969 + HP15_1120 0.33 +0.3 1,148,969 + HP15_1120 0.33 -0.1 1,148,977 - HP15_1120 0.34 +0.4 1,149,073 - HP15_1120 0.48 +1.2 1,149,105 - HP15_1120 0.53 +0.5 1,149,315 - HP15_1120 0.82 -0.8 1,149,333 - HP15_1120 0.85 -0.2 1,149,338 + HP15_1120 0.85 -1.6 1,149,346 - HP15_1120 0.87 -1.6 1,149,346 - HP15_1120 0.87 +0.5 1,149,346 - HP15_1120 0.87 +0.4 1,149,531 - -0.5 1,149,536 - +0.7 1,149,621 - -1.9 1,149,698 + HP15_1121 0.17 -1.1
Or see this region's nucleotide sequence