Strain Fitness in Marinobacter adhaerens HP15 around HP15_1023

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1022 and HP15_1023 are separated by 125 nucleotidesHP15_1023 and HP15_1024 are separated by 90 nucleotidesHP15_1024 and HP15_1025 overlap by 15 nucleotidesHP15_1025 and HP15_1026 are separated by 20 nucleotides HP15_1022: HP15_1022 - sensory box protein/GGDEF domain protein, at 1,037,954 to 1,039,810 _1022 HP15_1023: HP15_1023 - 6-aminohexanoate-cyclic-dimer hydrolase, at 1,039,936 to 1,041,432 _1023 HP15_1024: HP15_1024 - hypothetical protein, at 1,041,523 to 1,041,708 _1024 HP15_1025: HP15_1025 - isoprenylcysteine carboxyl methyltransferase-like protein, at 1,041,694 to 1,042,203 _1025 HP15_1026: HP15_1026 - DnaJ-like membrane chaperone protein, at 1,042,224 to 1,043,003 _1026 Position (kb) 1039 1040 1041 1042Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1038.993 kb on + strand, within HP15_1022at 1039.078 kb on + strand, within HP15_1022at 1039.125 kb on + strand, within HP15_1022at 1039.125 kb on + strand, within HP15_1022at 1039.125 kb on + strand, within HP15_1022at 1039.133 kb on - strand, within HP15_1022at 1039.133 kb on - strand, within HP15_1022at 1039.135 kb on + strand, within HP15_1022at 1039.135 kb on + strand, within HP15_1022at 1039.135 kb on + strand, within HP15_1022at 1039.135 kb on + strand, within HP15_1022at 1039.258 kb on + strand, within HP15_1022at 1039.263 kb on + strand, within HP15_1022at 1039.263 kb on + strand, within HP15_1022at 1039.271 kb on - strand, within HP15_1022at 1039.286 kb on - strand, within HP15_1022at 1039.297 kb on - strand, within HP15_1022at 1039.405 kb on - strand, within HP15_1022at 1039.544 kb on - strand, within HP15_1022at 1039.556 kb on + strand, within HP15_1022at 1039.586 kb on + strand, within HP15_1022at 1039.859 kb on - strandat 1039.951 kb on - strandat 1040.045 kb on + strandat 1040.077 kb on - strandat 1040.089 kb on - strand, within HP15_1023at 1040.122 kb on + strand, within HP15_1023at 1040.125 kb on - strand, within HP15_1023at 1040.242 kb on + strand, within HP15_1023at 1040.246 kb on + strand, within HP15_1023at 1040.351 kb on + strand, within HP15_1023at 1040.471 kb on + strand, within HP15_1023at 1040.471 kb on + strand, within HP15_1023at 1040.479 kb on - strand, within HP15_1023at 1040.479 kb on - strand, within HP15_1023at 1040.479 kb on - strand, within HP15_1023at 1040.481 kb on + strand, within HP15_1023at 1040.484 kb on - strand, within HP15_1023at 1040.484 kb on - strand, within HP15_1023at 1040.489 kb on - strand, within HP15_1023at 1040.501 kb on + strand, within HP15_1023at 1040.501 kb on + strand, within HP15_1023at 1040.566 kb on + strand, within HP15_1023at 1040.574 kb on - strand, within HP15_1023at 1040.625 kb on - strand, within HP15_1023at 1040.731 kb on + strand, within HP15_1023at 1040.731 kb on + strand, within HP15_1023at 1040.739 kb on - strand, within HP15_1023at 1040.819 kb on - strand, within HP15_1023at 1040.823 kb on + strand, within HP15_1023at 1040.823 kb on + strand, within HP15_1023at 1040.860 kb on - strand, within HP15_1023at 1040.906 kb on - strand, within HP15_1023at 1040.970 kb on + strand, within HP15_1023at 1041.190 kb on - strand, within HP15_1023at 1041.195 kb on - strand, within HP15_1023at 1041.213 kb on - strand, within HP15_1023at 1041.314 kb on - strandat 1041.415 kb on - strandat 1041.514 kb on + strandat 1041.682 kb on - strand, within HP15_1024at 1041.682 kb on - strand, within HP15_1024at 1041.684 kb on + strand, within HP15_1024at 1041.692 kb on - strandat 1041.708 kb on + strandat 1041.716 kb on - strandat 1041.763 kb on - strand, within HP15_1025at 1041.796 kb on + strand, within HP15_1025at 1041.978 kb on + strand, within HP15_1025at 1042.025 kb on - strand, within HP15_1025at 1042.214 kb on + strandat 1042.369 kb on - strand, within HP15_1026at 1042.418 kb on - strand, within HP15_1026

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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1,038,993 + HP15_1022 0.56 -2.5
1,039,078 + HP15_1022 0.61 +0.9
1,039,125 + HP15_1022 0.63 +0.2
1,039,125 + HP15_1022 0.63 -0.3
1,039,125 + HP15_1022 0.63 -1.2
1,039,133 - HP15_1022 0.63 +0.4
1,039,133 - HP15_1022 0.63 +0.2
1,039,135 + HP15_1022 0.64 -1.9
1,039,135 + HP15_1022 0.64 -0.8
1,039,135 + HP15_1022 0.64 -2.1
1,039,135 + HP15_1022 0.64 +1.0
1,039,258 + HP15_1022 0.70 -2.2
1,039,263 + HP15_1022 0.70 -0.9
1,039,263 + HP15_1022 0.70 +0.3
1,039,271 - HP15_1022 0.71 +0.2
1,039,286 - HP15_1022 0.72 -1.3
1,039,297 - HP15_1022 0.72 +0.1
1,039,405 - HP15_1022 0.78 -1.4
1,039,544 - HP15_1022 0.86 +0.3
1,039,556 + HP15_1022 0.86 -1.2
1,039,586 + HP15_1022 0.88 +1.5
1,039,859 - -0.3
1,039,951 - -0.2
1,040,045 + +0.7
1,040,077 - +0.2
1,040,089 - HP15_1023 0.10 +0.6
1,040,122 + HP15_1023 0.12 +0.7
1,040,125 - HP15_1023 0.13 -0.8
1,040,242 + HP15_1023 0.20 +0.5
1,040,246 + HP15_1023 0.21 +0.1
1,040,351 + HP15_1023 0.28 +0.0
1,040,471 + HP15_1023 0.36 +0.9
1,040,471 + HP15_1023 0.36 +0.1
1,040,479 - HP15_1023 0.36 -2.4
1,040,479 - HP15_1023 0.36 +0.3
1,040,479 - HP15_1023 0.36 +0.5
1,040,481 + HP15_1023 0.36 +0.6
1,040,484 - HP15_1023 0.37 +0.1
1,040,484 - HP15_1023 0.37 +0.5
1,040,489 - HP15_1023 0.37 +0.3
1,040,501 + HP15_1023 0.38 -0.5
1,040,501 + HP15_1023 0.38 -0.5
1,040,566 + HP15_1023 0.42 +0.7
1,040,574 - HP15_1023 0.43 +1.7
1,040,625 - HP15_1023 0.46 +0.3
1,040,731 + HP15_1023 0.53 +0.6
1,040,731 + HP15_1023 0.53 +4.0
1,040,739 - HP15_1023 0.54 -0.4
1,040,819 - HP15_1023 0.59 -0.0
1,040,823 + HP15_1023 0.59 -0.9
1,040,823 + HP15_1023 0.59 +0.0
1,040,860 - HP15_1023 0.62 +0.5
1,040,906 - HP15_1023 0.65 -0.4
1,040,970 + HP15_1023 0.69 +0.2
1,041,190 - HP15_1023 0.84 -0.0
1,041,195 - HP15_1023 0.84 +0.1
1,041,213 - HP15_1023 0.85 -1.3
1,041,314 - -0.3
1,041,415 - -0.3
1,041,514 + +1.0
1,041,682 - HP15_1024 0.85 +0.3
1,041,682 - HP15_1024 0.85 -2.3
1,041,684 + HP15_1024 0.87 -2.5
1,041,692 - +1.3
1,041,708 + -1.9
1,041,716 - +1.0
1,041,763 - HP15_1025 0.14 +0.2
1,041,796 + HP15_1025 0.20 +0.2
1,041,978 + HP15_1025 0.56 +1.2
1,042,025 - HP15_1025 0.65 -0.0
1,042,214 + +0.0
1,042,369 - HP15_1026 0.19 -0.1
1,042,418 - HP15_1026 0.25 -1.4

Or see this region's nucleotide sequence