Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15255

Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6
1,189,810	+				-0.9
1,189,831	+		BBR_RS20890	0.14	-1.6
1,189,831	+		BBR_RS20890	0.14	-0.2
1,189,831	+		BBR_RS20890	0.14	+3.1
1,189,831	+		BBR_RS20890	0.14	+1.5
1,189,839	-		BBR_RS20890	0.16	-0.9
1,189,839	-		BBR_RS20890	0.16	-0.2
1,189,839	-		BBR_RS20890	0.16	-0.4
1,189,884	+		BBR_RS20890	0.26	-1.4
1,189,935	-		BBR_RS20890	0.39	+1.7
1,189,975	+		BBR_RS20890	0.48	-0.1
1,190,093	+		BBR_RS20890	0.76	+1.5
1,190,126	+		BBR_RS20890	0.84	+0.7
1,190,138	+		BBR_RS20890	0.87	+0.7
1,190,138	+		BBR_RS20890	0.87	-0.5
1,190,145	-		BBR_RS20890	0.89	-0.4
1,190,173	-				+1.5
1,190,240	+				+3.4
1,190,279	+				+2.2
1,190,280	+				-0.4
1,190,303	-				-0.2
1,190,322	+				+0.1
1,190,330	-				+2.7
1,190,345	+				-1.1
1,190,353	-				-0.4
1,190,433	-				+0.4
1,190,464	-				+1.6
1,190,474	-				+2.9
1,190,489	-				+0.4
1,190,547	-				-0.3
1,190,549	+				+0.7
1,190,722	-		BBR_RS20895	0.58	+0.6
1,190,791	+				-1.6
1,190,834	+				-0.5
1,190,834	+				-1.2
1,190,836	+				-0.5
1,190,840	-				-0.7
1,190,844	+				+1.1
1,190,860	+				-2.0
1,190,870	-				-0.2
1,190,893	-				-1.1
1,190,938	+				-1.6
1,190,951	-				+0.7
1,190,953	+				-1.1
1,190,975	-				+0.7
1,191,002	+				+0.9
1,191,020	-				+2.7
1,191,035	+				-1.5
1,191,060	-				+1.3
1,191,163	-				+1.4
1,191,172	-				+0.1
1,191,201	+				+0.1
1,191,201	+				+0.0
1,191,201	+				-0.9
1,191,201	+				-1.0
1,191,201	+				+0.8
1,191,201	+				+0.1
1,191,201	+				-0.7
1,191,209	-				-0.1
1,191,209	-				+0.2
1,191,253	+		BBR_RS15255	0.10	-1.7
1,191,269	+		BBR_RS15255	0.11	-2.1
1,191,277	-		BBR_RS15255	0.11	+2.0
1,191,277	-		BBR_RS15255	0.11	+3.4
1,191,284	+		BBR_RS15255	0.11	+1.2
1,191,374	-		BBR_RS15255	0.13	+1.2
1,191,393	-		BBR_RS15255	0.13	+1.3
1,191,447	+		BBR_RS15255	0.14	-1.5
1,191,538	+		BBR_RS15255	0.16	-0.7
1,191,546	+		BBR_RS15255	0.17	+0.7
1,191,546	-		BBR_RS15255	0.17	-0.3
1,191,546	-		BBR_RS15255	0.17	-0.4
1,191,561	-		BBR_RS15255	0.17	+1.0
1,191,581	-		BBR_RS15255	0.17	+0.3
1,191,586	-		BBR_RS15255	0.17	+0.0
1,191,604	-		BBR_RS15255	0.18	+0.4
1,191,628	+		BBR_RS15255	0.18	-0.6
1,191,631	-		BBR_RS15255	0.18	+1.0
1,191,639	+		BBR_RS15255	0.19	+0.1
1,191,644	+		BBR_RS15255	0.19	-0.3
1,191,644	+		BBR_RS15255	0.19	+0.2
1,191,717	-		BBR_RS15255	0.20	+1.0
1,191,760	+		BBR_RS15255	0.21	+0.4
1,191,765	+		BBR_RS15255	0.21	+3.3
1,191,773	-		BBR_RS15255	0.22	-1.3
1,191,780	+		BBR_RS15255	0.22	-0.6
1,191,788	-		BBR_RS15255	0.22	-1.4
1,191,796	-		BBR_RS15255	0.22	-1.5
1,191,813	-		BBR_RS15255	0.22	-1.1
1,191,826	+		BBR_RS15255	0.23	-0.4
1,191,851	+		BBR_RS15255	0.23	-0.9
1,191,854	+		BBR_RS15255	0.23	-0.9
1,191,856	+		BBR_RS15255	0.23	-1.7
1,191,857	-		BBR_RS15255	0.23	+0.5
1,191,861	+		BBR_RS15255	0.24	+2.4
1,191,876	-		BBR_RS15255	0.24	-1.6
1,191,916	+		BBR_RS15255	0.25	-1.0
1,191,965	+		BBR_RS15255	0.26	+0.9
1,191,967	+		BBR_RS15255	0.26	+1.3
1,191,979	+		BBR_RS15255	0.26	-2.1
1,191,990	+		BBR_RS15255	0.26	+0.7
1,191,998	-		BBR_RS15255	0.27	-0.8
1,192,001	+		BBR_RS15255	0.27	-0.2
1,192,116	+		BBR_RS15255	0.29	-1.8
1,192,129	+		BBR_RS15255	0.29	-0.8
1,192,129	+		BBR_RS15255	0.29	-1.5
1,192,193	-		BBR_RS15255	0.31	-1.7
1,192,205	+		BBR_RS15255	0.31	-1.1
1,192,231	+		BBR_RS15255	0.32	+1.0
1,192,239	-		BBR_RS15255	0.32	-1.1
1,192,250	-		BBR_RS15255	0.32	-0.1
1,192,265	+		BBR_RS15255	0.32	-2.1
1,192,350	-		BBR_RS15255	0.34	-1.0
1,192,357	+		BBR_RS15255	0.34	+1.0
1,192,397	-		BBR_RS15255	0.35	-0.4
1,192,407	+		BBR_RS15255	0.35	+0.7
1,192,431	+		BBR_RS15255	0.36	-0.0
1,192,436	+		BBR_RS15255	0.36	-0.2
1,192,474	+		BBR_RS15255	0.37	-0.4
1,192,479	+		BBR_RS15255	0.37	-0.1
1,192,506	-		BBR_RS15255	0.38	-1.1
1,192,526	-		BBR_RS15255	0.38	-0.9
1,192,542	+		BBR_RS15255	0.38	-1.7
1,192,550	-		BBR_RS15255	0.39	-1.0
1,192,559	+		BBR_RS15255	0.39	-1.5
1,192,572	-		BBR_RS15255	0.39	-1.7
1,192,592	+		BBR_RS15255	0.40	+1.6
1,192,707	+		BBR_RS15255	0.42	+3.0
1,192,712	+		BBR_RS15255	0.42	+0.7
1,192,722	+		BBR_RS15255	0.42	+2.1
1,192,739	+		BBR_RS15255	0.43	+1.5
1,192,784	+		BBR_RS15255	0.44	-1.1
1,192,785	+		BBR_RS15255	0.44	-0.9
1,192,787	+		BBR_RS15255	0.44	+1.1
1,192,945	+		BBR_RS15255	0.47	-0.9
1,192,948	-		BBR_RS15255	0.47	+1.3
1,193,015	-		BBR_RS15255	0.49	-0.3
1,193,017	+		BBR_RS15255	0.49	-1.0
1,193,024	+		BBR_RS15255	0.49	-0.7
1,193,030	+		BBR_RS15255	0.49	+1.0
1,193,037	+		BBR_RS15255	0.49	-0.2
1,193,081	-		BBR_RS15255	0.50	+1.3
1,193,088	+		BBR_RS15255	0.50	+2.5
1,193,128	+		BBR_RS15255	0.51	-0.9
1,193,155	+		BBR_RS15255	0.52	+0.1
1,193,197	+		BBR_RS15255	0.53	-1.2
1,193,208	+		BBR_RS15255	0.53	+0.9
1,193,227	+		BBR_RS15255	0.53	+0.9
1,193,326	-		BBR_RS15255	0.56	-0.9
1,193,330	+		BBR_RS15255	0.56	-1.1
1,193,430	-		BBR_RS15255	0.58	-0.3
1,193,435	+		BBR_RS15255	0.58	+0.3
1,193,507	+		BBR_RS15255	0.60	-0.6
1,193,509	+		BBR_RS15255	0.60	+0.9
1,193,560	+		BBR_RS15255	0.61	+0.6
1,193,589	-		BBR_RS15255	0.61	+0.3
1,193,589	-		BBR_RS15255	0.61	+1.3
1,193,641	+		BBR_RS15255	0.62	+1.9
1,193,641	+		BBR_RS15255	0.62	+0.4
1,193,835	+		BBR_RS15255	0.67	+0.2
1,193,835	+		BBR_RS15255	0.67	-2.3
1,193,835	-		BBR_RS15255	0.67	-0.3
1,193,859	-		BBR_RS15255	0.67	-0.2
1,193,915	+		BBR_RS15255	0.68	-0.7
1,193,921	+		BBR_RS15255	0.69	+3.2
1,193,927	+		BBR_RS15255	0.69	+0.6
1,193,951	+		BBR_RS15255	0.69	+0.1
1,193,951	+		BBR_RS15255	0.69	-0.3
1,193,954	+		BBR_RS15255	0.69	-2.8
1,193,972	-		BBR_RS15255	0.70	+2.8
1,193,999	-		BBR_RS15255	0.70	-0.2
1,194,001	+		BBR_RS15255	0.70	-1.1
1,194,001	+		BBR_RS15255	0.70	+0.3
1,194,009	-		BBR_RS15255	0.70	-1.5
1,194,009	-		BBR_RS15255	0.70	-1.6
1,194,033	+		BBR_RS15255	0.71	-1.4
1,194,033	-		BBR_RS15255	0.71	-0.8
1,194,040	-		BBR_RS15255	0.71	-1.9
1,194,048	+		BBR_RS15255	0.71	-2.0
1,194,091	+		BBR_RS15255	0.72	+0.7
1,194,106	+		BBR_RS15255	0.73	+2.6
1,194,106	+		BBR_RS15255	0.73	+0.2
1,194,140	+		BBR_RS15255	0.73	-0.0
1,194,148	-		BBR_RS15255	0.74	+1.4
1,194,149	+		BBR_RS15255	0.74	-1.4
1,194,182	-		BBR_RS15255	0.74	-0.2
1,194,324	+		BBR_RS15255	0.77	-0.5
1,194,332	-		BBR_RS15255	0.78	-1.0
1,194,372	-		BBR_RS15255	0.78	-0.7
1,194,401	+		BBR_RS15255	0.79	-1.6
1,194,406	+		BBR_RS15255	0.79	-0.2
1,194,449	-		BBR_RS15255	0.80	-1.7
1,194,459	-		BBR_RS15255	0.80	-0.1
1,194,481	+		BBR_RS15255	0.81	-0.7
1,194,571	+		BBR_RS15255	0.83	+2.1
1,194,682	+		BBR_RS15255	0.85	+1.0
1,194,769	+		BBR_RS15255	0.87	-0.9
1,194,793	+		BBR_RS15255	0.88	+0.1
1,194,801	+		BBR_RS15255	0.88	+0.7
1,194,863	-		BBR_RS15255	0.89	+0.2
1,194,872	+		BBR_RS15255	0.89	-1.1
1,194,904	+				+0.6
1,194,912	+				-0.5
1,194,915	+				+1.0
1,194,975	+				-1.0
1,194,975	+				-0.8
1,194,975	+				-0.5
1,194,975	+				-0.0
1,194,983	-				+0.8
1,194,985	-				+1.9
1,194,990	+				+3.9
1,194,990	+				-1.3
1,195,011	+				+2.6
1,195,063	+				-0.3
1,195,071	-				-0.3
1,195,071	-				+0.4
1,195,150	+				+3.4
1,195,258	+				-0.4
1,195,351	+				-2.4
1,195,351	+				-1.9
1,195,356	+				-1.5
1,195,364	-				-0.2
1,195,488	-				-0.6
1,195,496	+				+0.2
1,195,523	+		BBR_RS15260	0.11	+0.1
1,195,654	+		BBR_RS15260	0.19	-0.1
1,195,654	+		BBR_RS15260	0.19	-2.6
1,195,662	-		BBR_RS15260	0.20	-1.8
1,195,687	+		BBR_RS15260	0.21	+0.1
1,195,690	-		BBR_RS15260	0.22	-0.1
1,195,724	+		BBR_RS15260	0.24	+0.4
1,195,724	+		BBR_RS15260	0.24	+0.8
1,195,781	+		BBR_RS15260	0.27	-1.5
1,195,845	+		BBR_RS15260	0.32	-0.1
1,196,052	-		BBR_RS15260	0.45	-1.5
1,196,093	+		BBR_RS15260	0.48	+1.2
1,196,214	+		BBR_RS15260	0.56	-1.2
1,196,241	+		BBR_RS15260	0.57	+2.0
1,196,349	+		BBR_RS15260	0.64	-0.3