Experiment: Plant=Tomato cv. C42M; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18360 and RALBFv3_RS18365 are separated by 75 nucleotides RALBFv3_RS18365 and RALBFv3_RS18370 are separated by 241 nucleotides RALBFv3_RS18370 and RALBFv3_RS18375 are separated by 26 nucleotides
RALBFv3_RS18360: RALBFv3_RS18360 - transcriptional regulator ArgP, at 642,114 to 643,010
_RS18360
RALBFv3_RS18365: RALBFv3_RS18365 - amino acid transporter, at 643,086 to 643,736
_RS18365
RALBFv3_RS18370: RALBFv3_RS18370 - RND transporter, at 643,978 to 645,504
_RS18370
RALBFv3_RS18375: RALBFv3_RS18375 - multidrug efflux RND transporter permease subunit, at 645,531 to 648,740
_RS18375
Position (kb) 643
644
645
646 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 643.000 kb on + strand at 643.047 kb on + strand at 643.103 kb on + strand at 643.103 kb on + strand at 643.362 kb on + strand, within RALBFv3_RS18365 at 643.362 kb on + strand, within RALBFv3_RS18365 at 643.363 kb on - strand, within RALBFv3_RS18365 at 643.363 kb on - strand, within RALBFv3_RS18365 at 643.363 kb on - strand, within RALBFv3_RS18365 at 643.363 kb on - strand, within RALBFv3_RS18365 at 643.363 kb on - strand, within RALBFv3_RS18365 at 643.491 kb on + strand, within RALBFv3_RS18365 at 643.492 kb on - strand, within RALBFv3_RS18365 at 643.499 kb on + strand, within RALBFv3_RS18365 at 643.711 kb on + strand at 643.762 kb on - strand at 643.910 kb on - strand at 643.979 kb on + strand at 643.979 kb on + strand at 644.160 kb on - strand, within RALBFv3_RS18370 at 644.160 kb on - strand, within RALBFv3_RS18370 at 644.885 kb on + strand, within RALBFv3_RS18370 at 644.886 kb on - strand, within RALBFv3_RS18370 at 644.886 kb on - strand, within RALBFv3_RS18370 at 645.035 kb on + strand, within RALBFv3_RS18370 at 645.035 kb on + strand, within RALBFv3_RS18370 at 645.396 kb on - strand at 645.396 kb on - strand at 645.532 kb on + strand at 645.643 kb on + strand at 645.644 kb on - strand at 646.043 kb on - strand, within RALBFv3_RS18375 at 646.043 kb on - strand, within RALBFv3_RS18375 at 646.126 kb on + strand, within RALBFv3_RS18375 at 646.126 kb on + strand, within RALBFv3_RS18375 at 646.127 kb on - strand, within RALBFv3_RS18375 at 646.264 kb on + strand, within RALBFv3_RS18375 at 646.414 kb on + strand, within RALBFv3_RS18375 at 646.415 kb on - strand, within RALBFv3_RS18375 at 646.415 kb on - strand, within RALBFv3_RS18375 at 646.415 kb on - strand, within RALBFv3_RS18375 at 646.448 kb on - strand, within RALBFv3_RS18375
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42M; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi remove 643,000 + +0.5 643,047 + +3.1 643,103 + +0.2 643,103 + +1.4 643,362 + RALBFv3_RS18365 0.42 +0.9 643,362 + RALBFv3_RS18365 0.42 +2.1 643,363 - RALBFv3_RS18365 0.43 -0.2 643,363 - RALBFv3_RS18365 0.43 -0.3 643,363 - RALBFv3_RS18365 0.43 +0.5 643,363 - RALBFv3_RS18365 0.43 -1.1 643,363 - RALBFv3_RS18365 0.43 -0.9 643,491 + RALBFv3_RS18365 0.62 -0.5 643,492 - RALBFv3_RS18365 0.62 -0.2 643,499 + RALBFv3_RS18365 0.63 +0.8 643,711 + +0.2 643,762 - -0.7 643,910 - -2.1 643,979 + +0.0 643,979 + -0.8 644,160 - RALBFv3_RS18370 0.12 +2.8 644,160 - RALBFv3_RS18370 0.12 +0.4 644,885 + RALBFv3_RS18370 0.59 +0.4 644,886 - RALBFv3_RS18370 0.59 -1.5 644,886 - RALBFv3_RS18370 0.59 +0.7 645,035 + RALBFv3_RS18370 0.69 +1.1 645,035 + RALBFv3_RS18370 0.69 -0.9 645,396 - +1.9 645,396 - -1.2 645,532 + -0.8 645,643 + +0.0 645,644 - +0.3 646,043 - RALBFv3_RS18375 0.16 +0.2 646,043 - RALBFv3_RS18375 0.16 -0.5 646,126 + RALBFv3_RS18375 0.19 -0.1 646,126 + RALBFv3_RS18375 0.19 +0.8 646,127 - RALBFv3_RS18375 0.19 +0.1 646,264 + RALBFv3_RS18375 0.23 -1.5 646,414 + RALBFv3_RS18375 0.28 +0.7 646,415 - RALBFv3_RS18375 0.28 +1.1 646,415 - RALBFv3_RS18375 0.28 -0.4 646,415 - RALBFv3_RS18375 0.28 -1.6 646,448 - RALBFv3_RS18375 0.29 -0.9
Or see this region's nucleotide sequence