Experiment: NoPredeControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23860 and HSERO_RS23865 are separated by 6 nucleotides HSERO_RS23865 and HSERO_RS23870 are separated by 18 nucleotides HSERO_RS23870 and HSERO_RS23875 are separated by 40 nucleotides HSERO_RS23875 and HSERO_RS23880 are separated by 35 nucleotides
HSERO_RS23860: HSERO_RS23860 - coniferyl aldehyde dehydrogenase, at 5,470,305 to 5,471,723
_RS23860
HSERO_RS23865: HSERO_RS23865 - cell division protein Fic, at 5,471,730 to 5,472,479
_RS23865
HSERO_RS23870: HSERO_RS23870 - lipoyl synthase, at 5,472,498 to 5,473,490
_RS23870
HSERO_RS23875: HSERO_RS23875 - lipoate-protein ligase B, at 5,473,531 to 5,474,223
_RS23875
HSERO_RS23880: HSERO_RS23880 - hypothetical protein, at 5,474,259 to 5,474,615
_RS23880
Position (kb) 5472
5473
5474 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5471.580 kb on + strand, within HSERO_RS23860 at 5471.612 kb on - strand at 5471.683 kb on + strand at 5471.712 kb on + strand at 5471.780 kb on - strand at 5471.853 kb on + strand, within HSERO_RS23865 at 5472.172 kb on + strand, within HSERO_RS23865 at 5472.172 kb on + strand, within HSERO_RS23865 at 5472.261 kb on - strand, within HSERO_RS23865 at 5472.313 kb on + strand, within HSERO_RS23865 at 5472.323 kb on + strand, within HSERO_RS23865 at 5472.323 kb on + strand, within HSERO_RS23865 at 5472.405 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPredeControl remove 5,471,580 + HSERO_RS23860 0.90 +0.4 5,471,612 - -0.8 5,471,683 + -3.7 5,471,712 + -2.2 5,471,780 - -1.3 5,471,853 + HSERO_RS23865 0.16 +1.0 5,472,172 + HSERO_RS23865 0.59 -3.0 5,472,172 + HSERO_RS23865 0.59 +1.6 5,472,261 - HSERO_RS23865 0.71 -0.5 5,472,313 + HSERO_RS23865 0.78 -1.2 5,472,323 + HSERO_RS23865 0.79 -0.3 5,472,323 + HSERO_RS23865 0.79 -0.2 5,472,405 + +0.8
Or see this region's nucleotide sequence