Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS18355

Experiment: NoPredeControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS18350 and HSERO_RS18355 are separated by 310 nucleotidesHSERO_RS18355 and HSERO_RS18360 overlap by 4 nucleotidesHSERO_RS18360 and HSERO_RS18365 are separated by 95 nucleotidesHSERO_RS18365 and HSERO_RS18370 are separated by 60 nucleotides HSERO_RS18350: HSERO_RS18350 - CoA transferase, at 4,211,107 to 4,212,354 _RS18350 HSERO_RS18355: HSERO_RS18355 - recombinase RecR, at 4,212,665 to 4,213,261 _RS18355 HSERO_RS18360: HSERO_RS18360 - hypothetical protein, at 4,213,258 to 4,213,560 _RS18360 HSERO_RS18365: HSERO_RS18365 - hypothetical protein, at 4,213,656 to 4,213,982 _RS18365 HSERO_RS18370: HSERO_RS18370 - DNA polymerase III subunit gamma/tau, at 4,214,043 to 4,216,181 _RS18370 Position (kb) 4212 4213 4214Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4211.703 kb on - strand, within HSERO_RS18350at 4212.156 kb on - strand, within HSERO_RS18350at 4212.235 kb on + strandat 4212.680 kb on + strandat 4212.915 kb on - strand, within HSERO_RS18355at 4212.970 kb on + strand, within HSERO_RS18355at 4212.989 kb on - strand, within HSERO_RS18355at 4213.077 kb on + strand, within HSERO_RS18355at 4213.085 kb on - strand, within HSERO_RS18355at 4213.085 kb on - strand, within HSERO_RS18355at 4213.176 kb on + strand, within HSERO_RS18355at 4213.184 kb on - strand, within HSERO_RS18355at 4213.429 kb on + strand, within HSERO_RS18360at 4213.735 kb on + strand, within HSERO_RS18365at 4213.775 kb on - strand, within HSERO_RS18365at 4214.060 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPredeControl
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4,211,703 - HSERO_RS18350 0.48 -0.8
4,212,156 - HSERO_RS18350 0.84 -2.0
4,212,235 + -0.2
4,212,680 + +1.4
4,212,915 - HSERO_RS18355 0.42 -4.5
4,212,970 + HSERO_RS18355 0.51 -0.5
4,212,989 - HSERO_RS18355 0.54 +2.8
4,213,077 + HSERO_RS18355 0.69 -0.8
4,213,085 - HSERO_RS18355 0.70 +1.3
4,213,085 - HSERO_RS18355 0.70 -1.0
4,213,176 + HSERO_RS18355 0.86 +0.7
4,213,184 - HSERO_RS18355 0.87 -0.5
4,213,429 + HSERO_RS18360 0.56 +0.8
4,213,735 + HSERO_RS18365 0.24 -0.7
4,213,775 - HSERO_RS18365 0.36 -4.8
4,214,060 + -3.5

Or see this region's nucleotide sequence