Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00530

Experiment: NoPredeControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS00525 and HSERO_RS00530 are separated by 292 nucleotidesHSERO_RS00530 and HSERO_RS00535 are separated by 331 nucleotides HSERO_RS00525: HSERO_RS00525 - DNA-directed RNA polymerase subunit beta, at 115,646 to 119,752 _RS00525 HSERO_RS00530: HSERO_RS00530 - DNA-directed RNA polymerase subunit beta', at 120,045 to 124,286 _RS00530 HSERO_RS00535: HSERO_RS00535 - TonB-dependent receptor, at 124,618 to 126,906 _RS00535 Position (kb) 120 121 122 123 124 125Strain fitness (log2 ratio) -1 0 1at 119.868 kb on + strandat 124.405 kb on + strandat 124.405 kb on + strandat 124.507 kb on + strandat 124.586 kb on + strandat 124.725 kb on - strandat 124.738 kb on - strandat 125.184 kb on - strand, within HSERO_RS00535at 125.184 kb on - strand, within HSERO_RS00535at 125.231 kb on - strand, within HSERO_RS00535

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPredeControl
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119,868 + +1.1
124,405 + -0.2
124,405 + -1.4
124,507 + +0.5
124,586 + +1.4
124,725 - +0.7
124,738 - -1.4
125,184 - HSERO_RS00535 0.25 +1.0
125,184 - HSERO_RS00535 0.25 -1.3
125,231 - HSERO_RS00535 0.27 -1.0

Or see this region's nucleotide sequence