Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_804 and HP15_805 are separated by 48 nucleotides HP15_805 and HP15_806 are separated by 158 nucleotides
HP15_804: HP15_804 - protein containing DUF470, at 819,656 to 820,663
_804
HP15_805: HP15_805 - methylase involved in ubiquinone/menaquinone biosynthesis, at 820,712 to 821,440
_805
HP15_806: HP15_806 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 821,599 to 823,773
_806
Position (kb) 820
821
822 Strain fitness (log2 ratio) -2
-1
0
1
2 at 819.853 kb on + strand, within HP15_804 at 820.168 kb on + strand, within HP15_804 at 820.238 kb on + strand, within HP15_804 at 820.246 kb on - strand, within HP15_804 at 820.313 kb on + strand, within HP15_804 at 820.365 kb on + strand, within HP15_804 at 820.423 kb on - strand, within HP15_804 at 820.562 kb on - strand, within HP15_804 at 820.616 kb on + strand at 820.616 kb on + strand at 820.616 kb on + strand at 820.624 kb on - strand at 820.626 kb on - strand at 820.627 kb on + strand at 820.640 kb on - strand at 820.640 kb on - strand at 820.710 kb on + strand at 820.800 kb on - strand, within HP15_805 at 820.820 kb on + strand, within HP15_805 at 820.820 kb on + strand, within HP15_805 at 820.855 kb on + strand, within HP15_805 at 821.027 kb on + strand, within HP15_805 at 821.176 kb on + strand, within HP15_805 at 821.184 kb on - strand, within HP15_805 at 821.184 kb on - strand, within HP15_805 at 821.490 kb on + strand at 821.688 kb on + strand at 821.887 kb on - strand, within HP15_806 at 821.901 kb on - strand, within HP15_806 at 822.038 kb on + strand, within HP15_806 at 822.120 kb on + strand, within HP15_806 at 822.184 kb on + strand, within HP15_806 at 822.241 kb on - strand, within HP15_806 at 822.310 kb on + strand, within HP15_806 at 822.353 kb on - strand, within HP15_806
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 819,853 + HP15_804 0.20 +1.5 820,168 + HP15_804 0.51 +0.7 820,238 + HP15_804 0.58 +1.8 820,246 - HP15_804 0.59 -0.8 820,313 + HP15_804 0.65 +0.5 820,365 + HP15_804 0.70 +2.1 820,423 - HP15_804 0.76 -1.3 820,562 - HP15_804 0.90 +1.8 820,616 + +1.7 820,616 + -0.1 820,616 + -1.1 820,624 - -0.9 820,626 - +1.2 820,627 + +0.6 820,640 - +0.1 820,640 - -0.4 820,710 + -0.5 820,800 - HP15_805 0.12 -1.1 820,820 + HP15_805 0.15 -0.0 820,820 + HP15_805 0.15 +1.4 820,855 + HP15_805 0.20 -0.7 821,027 + HP15_805 0.43 -0.1 821,176 + HP15_805 0.64 -1.0 821,184 - HP15_805 0.65 +0.3 821,184 - HP15_805 0.65 +1.8 821,490 + -1.1 821,688 + -0.9 821,887 - HP15_806 0.13 +1.1 821,901 - HP15_806 0.14 -0.2 822,038 + HP15_806 0.20 -0.7 822,120 + HP15_806 0.24 -2.1 822,184 + HP15_806 0.27 -1.0 822,241 - HP15_806 0.30 +1.0 822,310 + HP15_806 0.33 -1.1 822,353 - HP15_806 0.35 +0.1
Or see this region's nucleotide sequence