Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_792 and HP15_793 are separated by 136 nucleotides HP15_793 and HP15_794 are separated by 32 nucleotides HP15_794 and HP15_795 are separated by 143 nucleotides
HP15_792: HP15_792 - nucleoside triphosphate pyrophosphohydrolase, at 806,654 to 807,511
_792
HP15_793: HP15_793 - conserved hypothetical protein, at 807,648 to 807,992
_793
HP15_794: HP15_794 - conserved hypothetical protein, at 808,025 to 808,258
_794
HP15_795: HP15_795 - phosphoenolpyruvate carboxylase, at 808,402 to 811,008
_795
Position (kb) 808
809 Strain fitness (log2 ratio) -1
0
1
2 at 807.042 kb on - strand, within HP15_792 at 807.042 kb on - strand, within HP15_792 at 807.176 kb on - strand, within HP15_792 at 807.226 kb on + strand, within HP15_792 at 807.234 kb on - strand, within HP15_792 at 807.337 kb on + strand, within HP15_792 at 807.350 kb on - strand, within HP15_792 at 807.475 kb on + strand at 807.510 kb on + strand at 807.822 kb on - strand, within HP15_793 at 808.079 kb on + strand, within HP15_794 at 808.087 kb on - strand, within HP15_794 at 808.087 kb on - strand, within HP15_794 at 808.103 kb on + strand, within HP15_794 at 808.186 kb on + strand, within HP15_794 at 808.279 kb on + strand at 808.365 kb on + strand at 808.449 kb on + strand at 808.664 kb on - strand, within HP15_795 at 808.768 kb on - strand, within HP15_795 at 808.843 kb on - strand, within HP15_795 at 808.942 kb on - strand, within HP15_795 at 809.170 kb on + strand, within HP15_795 at 809.225 kb on + strand, within HP15_795
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 807,042 - HP15_792 0.45 +0.0 807,042 - HP15_792 0.45 +1.5 807,176 - HP15_792 0.61 -0.3 807,226 + HP15_792 0.67 -0.2 807,234 - HP15_792 0.68 -0.8 807,337 + HP15_792 0.80 +1.4 807,350 - HP15_792 0.81 +0.8 807,475 + -0.4 807,510 + +0.3 807,822 - HP15_793 0.50 -0.5 808,079 + HP15_794 0.23 +2.1 808,087 - HP15_794 0.26 +1.4 808,087 - HP15_794 0.26 -0.0 808,103 + HP15_794 0.33 +0.7 808,186 + HP15_794 0.69 +1.5 808,279 + +0.9 808,365 + +2.1 808,449 + -0.0 808,664 - HP15_795 0.10 -1.1 808,768 - HP15_795 0.14 +1.7 808,843 - HP15_795 0.17 -0.3 808,942 - HP15_795 0.21 +0.0 809,170 + HP15_795 0.29 -0.1 809,225 + HP15_795 0.32 +0.9
Or see this region's nucleotide sequence