Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_581 and HP15_582 overlap by 1 nucleotides HP15_582 and HP15_583 are separated by 55 nucleotides HP15_583 and HP15_584 are separated by 46 nucleotides HP15_584 and HP15_585 are separated by 10 nucleotides
HP15_581: HP15_581 - geranyltranstransferase, at 603,458 to 604,354
_581
HP15_582: HP15_582 - exonuclease VII, small subunit, at 604,354 to 604,608
_582
HP15_583: HP15_583 - protein containing DUF833, at 604,664 to 605,437
_583
HP15_584: HP15_584 - membrane protein containing DUF81, at 605,484 to 606,323
_584
HP15_585: HP15_585 - prolipoprotein diacylglyceryl transferase, at 606,334 to 607,122
_585
Position (kb) 604
605
606 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 604.225 kb on - strand, within HP15_581 at 604.369 kb on - strand at 604.509 kb on - strand, within HP15_582 at 604.651 kb on - strand at 604.651 kb on - strand at 604.829 kb on + strand, within HP15_583 at 604.912 kb on + strand, within HP15_583 at 604.920 kb on - strand, within HP15_583 at 605.013 kb on + strand, within HP15_583 at 605.090 kb on - strand, within HP15_583 at 605.114 kb on - strand, within HP15_583 at 605.132 kb on - strand, within HP15_583 at 605.134 kb on - strand, within HP15_583 at 605.163 kb on + strand, within HP15_583 at 605.238 kb on + strand, within HP15_583 at 605.246 kb on - strand, within HP15_583 at 605.246 kb on - strand, within HP15_583 at 605.336 kb on + strand, within HP15_583 at 605.439 kb on + strand at 605.439 kb on + strand at 605.439 kb on + strand at 605.447 kb on - strand at 605.447 kb on - strand at 605.447 kb on - strand at 605.484 kb on + strand at 605.486 kb on + strand at 605.571 kb on + strand, within HP15_584 at 605.728 kb on + strand, within HP15_584 at 605.762 kb on + strand, within HP15_584 at 605.769 kb on + strand, within HP15_584 at 605.774 kb on + strand, within HP15_584 at 606.013 kb on + strand, within HP15_584 at 606.013 kb on + strand, within HP15_584 at 606.065 kb on + strand, within HP15_584 at 606.113 kb on + strand, within HP15_584 at 606.119 kb on + strand, within HP15_584 at 606.129 kb on + strand, within HP15_584 at 606.229 kb on + strand, within HP15_584 at 606.229 kb on + strand, within HP15_584
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 604,225 - HP15_581 0.86 +0.2 604,369 - +1.0 604,509 - HP15_582 0.61 +0.4 604,651 - +1.5 604,651 - +0.2 604,829 + HP15_583 0.21 -0.8 604,912 + HP15_583 0.32 +2.3 604,920 - HP15_583 0.33 +2.5 605,013 + HP15_583 0.45 +1.2 605,090 - HP15_583 0.55 +0.4 605,114 - HP15_583 0.58 +1.5 605,132 - HP15_583 0.60 +2.2 605,134 - HP15_583 0.61 +1.4 605,163 + HP15_583 0.64 +1.5 605,238 + HP15_583 0.74 -3.1 605,246 - HP15_583 0.75 +2.0 605,246 - HP15_583 0.75 -0.3 605,336 + HP15_583 0.87 -2.0 605,439 + +1.4 605,439 + -0.3 605,439 + +0.5 605,447 - +1.6 605,447 - -0.0 605,447 - +0.3 605,484 + +1.8 605,486 + -0.8 605,571 + HP15_584 0.10 -0.5 605,728 + HP15_584 0.29 -0.4 605,762 + HP15_584 0.33 -1.3 605,769 + HP15_584 0.34 -0.5 605,774 + HP15_584 0.35 -0.8 606,013 + HP15_584 0.63 +1.4 606,013 + HP15_584 0.63 -1.4 606,065 + HP15_584 0.69 -1.6 606,113 + HP15_584 0.75 -1.9 606,119 + HP15_584 0.76 +1.4 606,129 + HP15_584 0.77 +0.5 606,229 + HP15_584 0.89 +1.4 606,229 + HP15_584 0.89 -1.7
Or see this region's nucleotide sequence