Strain Fitness in Marinobacter adhaerens HP15 around HP15_576

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_575 and HP15_576 are separated by 127 nucleotidesHP15_576 and HP15_577 are separated by 2 nucleotides HP15_575: HP15_575 - preprotein translocase, SecA subunit, at 594,942 to 597,680 _575 HP15_576: HP15_576 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein, at 597,808 to 599,025 _576 HP15_577: HP15_577 - mutator MutT protein, at 599,028 to 599,999 _577 Position (kb) 597 598 599 600Strain fitness (log2 ratio) -2 -1 0 1 2at 597.426 kb on + strandat 597.426 kb on + strandat 597.696 kb on + strandat 597.792 kb on - strandat 597.985 kb on + strand, within HP15_576at 598.299 kb on + strand, within HP15_576at 598.598 kb on + strand, within HP15_576at 598.698 kb on - strand, within HP15_576at 598.701 kb on + strand, within HP15_576at 598.733 kb on + strand, within HP15_576at 598.966 kb on + strandat 599.065 kb on - strandat 599.378 kb on + strand, within HP15_577at 599.438 kb on - strand, within HP15_577

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
remove
597,426 + +2.5
597,426 + +0.7
597,696 + -0.4
597,792 - +0.8
597,985 + HP15_576 0.15 +0.4
598,299 + HP15_576 0.40 -2.4
598,598 + HP15_576 0.65 -2.1
598,698 - HP15_576 0.73 +1.0
598,701 + HP15_576 0.73 -0.0
598,733 + HP15_576 0.76 -0.9
598,966 + +0.6
599,065 - -1.9
599,378 + HP15_577 0.36 -1.2
599,438 - HP15_577 0.42 +0.4

Or see this region's nucleotide sequence