Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g158 and HP15_p187g159 are separated by 168 nucleotides HP15_p187g159 and HP15_p187g160 are separated by 17 nucleotides
HP15_p187g158: HP15_p187g158 - alpha/beta hydrolase fold protein, at 159,346 to 160,383
_p187g158
HP15_p187g159: HP15_p187g159 - kelch domain protein, at 160,552 to 162,888
_p187g159
HP15_p187g160: HP15_p187g160 - conserved hypothetical protein, secreted, at 162,906 to 163,457
_p187g160
Position (kb) 160
161
162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 159.670 kb on + strand, within HP15_p187g158 at 159.670 kb on + strand, within HP15_p187g158 at 159.677 kb on - strand, within HP15_p187g158 at 159.730 kb on + strand, within HP15_p187g158 at 159.730 kb on - strand, within HP15_p187g158 at 159.748 kb on - strand, within HP15_p187g158 at 159.812 kb on + strand, within HP15_p187g158 at 159.812 kb on + strand, within HP15_p187g158 at 159.812 kb on + strand, within HP15_p187g158 at 159.814 kb on + strand, within HP15_p187g158 at 159.832 kb on + strand, within HP15_p187g158 at 159.906 kb on + strand, within HP15_p187g158 at 159.906 kb on + strand, within HP15_p187g158 at 159.909 kb on - strand, within HP15_p187g158 at 159.914 kb on - strand, within HP15_p187g158 at 159.944 kb on + strand, within HP15_p187g158 at 159.996 kb on + strand, within HP15_p187g158 at 159.996 kb on + strand, within HP15_p187g158 at 160.004 kb on - strand, within HP15_p187g158 at 160.004 kb on - strand, within HP15_p187g158 at 160.004 kb on - strand, within HP15_p187g158 at 160.012 kb on + strand, within HP15_p187g158 at 160.066 kb on + strand, within HP15_p187g158 at 160.067 kb on - strand, within HP15_p187g158 at 160.114 kb on + strand, within HP15_p187g158 at 160.122 kb on - strand, within HP15_p187g158 at 160.128 kb on + strand, within HP15_p187g158 at 160.146 kb on - strand, within HP15_p187g158 at 160.158 kb on + strand, within HP15_p187g158 at 160.187 kb on - strand, within HP15_p187g158 at 160.198 kb on + strand, within HP15_p187g158 at 160.198 kb on + strand, within HP15_p187g158 at 160.206 kb on - strand, within HP15_p187g158 at 160.208 kb on + strand, within HP15_p187g158 at 160.231 kb on + strand, within HP15_p187g158 at 160.233 kb on + strand, within HP15_p187g158 at 160.234 kb on - strand, within HP15_p187g158 at 160.236 kb on + strand, within HP15_p187g158 at 160.239 kb on - strand, within HP15_p187g158 at 160.239 kb on - strand, within HP15_p187g158 at 160.300 kb on + strand at 160.306 kb on + strand at 160.308 kb on - strand at 160.308 kb on - strand at 160.320 kb on + strand at 160.328 kb on - strand at 160.355 kb on + strand at 160.363 kb on - strand at 160.380 kb on - strand at 160.400 kb on + strand at 160.589 kb on + strand at 160.594 kb on + strand at 160.594 kb on + strand at 160.602 kb on - strand at 160.602 kb on - strand at 160.665 kb on + strand at 160.712 kb on - strand at 160.783 kb on + strand at 160.851 kb on - strand, within HP15_p187g159 at 160.860 kb on + strand, within HP15_p187g159 at 160.860 kb on + strand, within HP15_p187g159 at 160.896 kb on - strand, within HP15_p187g159 at 160.940 kb on + strand, within HP15_p187g159 at 160.958 kb on - strand, within HP15_p187g159 at 160.958 kb on - strand, within HP15_p187g159 at 160.963 kb on - strand, within HP15_p187g159 at 160.971 kb on - strand, within HP15_p187g159 at 160.994 kb on + strand, within HP15_p187g159 at 160.994 kb on + strand, within HP15_p187g159 at 161.002 kb on - strand, within HP15_p187g159 at 161.077 kb on + strand, within HP15_p187g159 at 161.090 kb on - strand, within HP15_p187g159 at 161.092 kb on + strand, within HP15_p187g159 at 161.092 kb on - strand, within HP15_p187g159 at 161.094 kb on + strand, within HP15_p187g159 at 161.107 kb on + strand, within HP15_p187g159 at 161.107 kb on + strand, within HP15_p187g159 at 161.128 kb on + strand, within HP15_p187g159 at 161.128 kb on + strand, within HP15_p187g159 at 161.172 kb on + strand, within HP15_p187g159 at 161.230 kb on + strand, within HP15_p187g159 at 161.377 kb on - strand, within HP15_p187g159 at 161.447 kb on - strand, within HP15_p187g159 at 161.611 kb on + strand, within HP15_p187g159 at 161.612 kb on + strand, within HP15_p187g159 at 161.612 kb on + strand, within HP15_p187g159 at 161.620 kb on - strand, within HP15_p187g159 at 161.631 kb on + strand, within HP15_p187g159 at 161.639 kb on - strand, within HP15_p187g159 at 161.641 kb on - strand, within HP15_p187g159 at 161.666 kb on + strand, within HP15_p187g159 at 161.667 kb on + strand, within HP15_p187g159 at 161.674 kb on - strand, within HP15_p187g159 at 161.695 kb on + strand, within HP15_p187g159 at 161.703 kb on - strand, within HP15_p187g159 at 161.703 kb on - strand, within HP15_p187g159 at 161.703 kb on - strand, within HP15_p187g159 at 161.738 kb on + strand, within HP15_p187g159 at 161.746 kb on - strand, within HP15_p187g159 at 161.754 kb on - strand, within HP15_p187g159 at 161.812 kb on - strand, within HP15_p187g159 at 161.812 kb on - strand, within HP15_p187g159 at 161.846 kb on + strand, within HP15_p187g159 at 161.853 kb on + strand, within HP15_p187g159 at 161.906 kb on + strand, within HP15_p187g159 at 161.989 kb on + strand, within HP15_p187g159 at 161.989 kb on + strand, within HP15_p187g159 at 161.997 kb on - strand, within HP15_p187g159 at 162.012 kb on - strand, within HP15_p187g159 at 162.048 kb on + strand, within HP15_p187g159 at 162.050 kb on + strand, within HP15_p187g159 at 162.058 kb on - strand, within HP15_p187g159 at 162.085 kb on - strand, within HP15_p187g159 at 162.107 kb on + strand, within HP15_p187g159 at 162.107 kb on + strand, within HP15_p187g159 at 162.107 kb on + strand, within HP15_p187g159 at 162.115 kb on - strand, within HP15_p187g159 at 162.121 kb on + strand, within HP15_p187g159 at 162.285 kb on + strand, within HP15_p187g159 at 162.286 kb on - strand, within HP15_p187g159 at 162.293 kb on - strand, within HP15_p187g159 at 162.295 kb on + strand, within HP15_p187g159 at 162.297 kb on + strand, within HP15_p187g159 at 162.297 kb on + strand, within HP15_p187g159 at 162.354 kb on + strand, within HP15_p187g159 at 162.362 kb on - strand, within HP15_p187g159 at 162.406 kb on + strand, within HP15_p187g159 at 162.416 kb on + strand, within HP15_p187g159 at 162.428 kb on - strand, within HP15_p187g159 at 162.447 kb on + strand, within HP15_p187g159 at 162.447 kb on + strand, within HP15_p187g159 at 162.455 kb on - strand, within HP15_p187g159 at 162.455 kb on - strand, within HP15_p187g159 at 162.455 kb on - strand, within HP15_p187g159 at 162.455 kb on - strand, within HP15_p187g159 at 162.455 kb on - strand, within HP15_p187g159 at 162.469 kb on + strand, within HP15_p187g159 at 162.516 kb on + strand, within HP15_p187g159 at 162.521 kb on + strand, within HP15_p187g159 at 162.564 kb on - strand, within HP15_p187g159 at 162.628 kb on + strand, within HP15_p187g159 at 162.636 kb on - strand, within HP15_p187g159 at 162.672 kb on + strand at 162.691 kb on + strand at 162.695 kb on + strand at 162.699 kb on - strand at 162.699 kb on - strand at 162.699 kb on - strand at 162.704 kb on - strand at 162.731 kb on + strand at 162.745 kb on + strand at 162.759 kb on - strand at 162.770 kb on + strand at 162.794 kb on - strand at 162.802 kb on - strand at 162.802 kb on - strand at 162.835 kb on - strand at 162.914 kb on + strand at 162.914 kb on + strand at 162.919 kb on + strand at 162.919 kb on + strand at 162.927 kb on - strand at 162.927 kb on - strand at 162.927 kb on - strand at 162.965 kb on - strand, within HP15_p187g160 at 162.981 kb on + strand, within HP15_p187g160 at 162.989 kb on - strand, within HP15_p187g160 at 163.016 kb on + strand, within HP15_p187g160 at 163.023 kb on + strand, within HP15_p187g160 at 163.023 kb on + strand, within HP15_p187g160 at 163.023 kb on + strand, within HP15_p187g160 at 163.023 kb on + strand, within HP15_p187g160 at 163.028 kb on + strand, within HP15_p187g160 at 163.031 kb on - strand, within HP15_p187g160 at 163.031 kb on - strand, within HP15_p187g160 at 163.031 kb on - strand, within HP15_p187g160 at 163.062 kb on + strand, within HP15_p187g160 at 163.100 kb on - strand, within HP15_p187g160 at 163.104 kb on + strand, within HP15_p187g160 at 163.112 kb on - strand, within HP15_p187g160 at 163.140 kb on + strand, within HP15_p187g160 at 163.148 kb on - strand, within HP15_p187g160 at 163.238 kb on + strand, within HP15_p187g160 at 163.248 kb on - strand, within HP15_p187g160 at 163.300 kb on + strand, within HP15_p187g160 at 163.335 kb on + strand, within HP15_p187g160 at 163.340 kb on + strand, within HP15_p187g160 at 163.343 kb on - strand, within HP15_p187g160 at 163.343 kb on - strand, within HP15_p187g160 at 163.343 kb on - strand, within HP15_p187g160 at 163.344 kb on + strand, within HP15_p187g160 at 163.345 kb on + strand, within HP15_p187g160 at 163.353 kb on - strand, within HP15_p187g160 at 163.357 kb on + strand, within HP15_p187g160 at 163.377 kb on + strand, within HP15_p187g160 at 163.378 kb on - strand, within HP15_p187g160 at 163.407 kb on + strand at 163.486 kb on + strand at 163.487 kb on - strand at 163.494 kb on - strand at 163.560 kb on + strand at 163.560 kb on + strand at 163.568 kb on - strand at 163.628 kb on + strand at 163.715 kb on - strand at 163.738 kb on + strand at 163.776 kb on + strand at 163.784 kb on - strand at 163.789 kb on - strand at 163.806 kb on - strand at 163.846 kb on - strand at 163.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 159,670 + HP15_p187g158 0.31 +0.5 159,670 + HP15_p187g158 0.31 -0.5 159,677 - HP15_p187g158 0.32 +2.0 159,730 + HP15_p187g158 0.37 +3.0 159,730 - HP15_p187g158 0.37 -0.4 159,748 - HP15_p187g158 0.39 -0.1 159,812 + HP15_p187g158 0.45 -0.3 159,812 + HP15_p187g158 0.45 +1.6 159,812 + HP15_p187g158 0.45 +1.6 159,814 + HP15_p187g158 0.45 -0.3 159,832 + HP15_p187g158 0.47 +1.9 159,906 + HP15_p187g158 0.54 -1.3 159,906 + HP15_p187g158 0.54 -1.3 159,909 - HP15_p187g158 0.54 -0.3 159,914 - HP15_p187g158 0.55 +1.6 159,944 + HP15_p187g158 0.58 -0.6 159,996 + HP15_p187g158 0.63 +0.6 159,996 + HP15_p187g158 0.63 -1.4 160,004 - HP15_p187g158 0.63 -0.3 160,004 - HP15_p187g158 0.63 +3.0 160,004 - HP15_p187g158 0.63 -1.5 160,012 + HP15_p187g158 0.64 +1.5 160,066 + HP15_p187g158 0.69 +0.2 160,067 - HP15_p187g158 0.69 -0.2 160,114 + HP15_p187g158 0.74 +0.5 160,122 - HP15_p187g158 0.75 +2.0 160,128 + HP15_p187g158 0.75 +2.5 160,146 - HP15_p187g158 0.77 -2.3 160,158 + HP15_p187g158 0.78 -0.1 160,187 - HP15_p187g158 0.81 -0.5 160,198 + HP15_p187g158 0.82 +2.1 160,198 + HP15_p187g158 0.82 -0.5 160,206 - HP15_p187g158 0.83 -0.8 160,208 + HP15_p187g158 0.83 -1.8 160,231 + HP15_p187g158 0.85 -0.3 160,233 + HP15_p187g158 0.85 -0.1 160,234 - HP15_p187g158 0.86 -2.0 160,236 + HP15_p187g158 0.86 -0.6 160,239 - HP15_p187g158 0.86 -0.4 160,239 - HP15_p187g158 0.86 +0.8 160,300 + +0.4 160,306 + +1.7 160,308 - -0.0 160,308 - +1.5 160,320 + +0.5 160,328 - -0.6 160,355 + -0.9 160,363 - +1.8 160,380 - +0.2 160,400 + -0.9 160,589 + +1.9 160,594 + +1.5 160,594 + -2.0 160,602 - +1.6 160,602 - +1.7 160,665 + +1.1 160,712 - +1.1 160,783 + -0.8 160,851 - HP15_p187g159 0.13 +2.8 160,860 + HP15_p187g159 0.13 +0.6 160,860 + HP15_p187g159 0.13 -0.4 160,896 - HP15_p187g159 0.15 -1.1 160,940 + HP15_p187g159 0.17 -0.7 160,958 - HP15_p187g159 0.17 -1.2 160,958 - HP15_p187g159 0.17 -0.4 160,963 - HP15_p187g159 0.18 -1.1 160,971 - HP15_p187g159 0.18 +1.7 160,994 + HP15_p187g159 0.19 +0.5 160,994 + HP15_p187g159 0.19 +0.1 161,002 - HP15_p187g159 0.19 +1.3 161,077 + HP15_p187g159 0.22 -2.1 161,090 - HP15_p187g159 0.23 +1.2 161,092 + HP15_p187g159 0.23 +0.5 161,092 - HP15_p187g159 0.23 -0.1 161,094 + HP15_p187g159 0.23 -0.2 161,107 + HP15_p187g159 0.24 +0.3 161,107 + HP15_p187g159 0.24 +0.7 161,128 + HP15_p187g159 0.25 -0.2 161,128 + HP15_p187g159 0.25 -2.2 161,172 + HP15_p187g159 0.27 +1.9 161,230 + HP15_p187g159 0.29 -1.3 161,377 - HP15_p187g159 0.35 -1.5 161,447 - HP15_p187g159 0.38 -0.5 161,611 + HP15_p187g159 0.45 -0.9 161,612 + HP15_p187g159 0.45 +0.2 161,612 + HP15_p187g159 0.45 -0.0 161,620 - HP15_p187g159 0.46 -0.9 161,631 + HP15_p187g159 0.46 +1.1 161,639 - HP15_p187g159 0.47 +1.2 161,641 - HP15_p187g159 0.47 -0.4 161,666 + HP15_p187g159 0.48 +0.6 161,667 + HP15_p187g159 0.48 +1.8 161,674 - HP15_p187g159 0.48 +2.0 161,695 + HP15_p187g159 0.49 -0.1 161,703 - HP15_p187g159 0.49 -0.2 161,703 - HP15_p187g159 0.49 +0.2 161,703 - HP15_p187g159 0.49 -1.0 161,738 + HP15_p187g159 0.51 +1.0 161,746 - HP15_p187g159 0.51 -1.2 161,754 - HP15_p187g159 0.51 -0.3 161,812 - HP15_p187g159 0.54 -1.5 161,812 - HP15_p187g159 0.54 -1.2 161,846 + HP15_p187g159 0.55 -0.9 161,853 + HP15_p187g159 0.56 +1.3 161,906 + HP15_p187g159 0.58 -0.2 161,989 + HP15_p187g159 0.61 -0.7 161,989 + HP15_p187g159 0.61 -1.1 161,997 - HP15_p187g159 0.62 +0.3 162,012 - HP15_p187g159 0.62 +2.0 162,048 + HP15_p187g159 0.64 -1.0 162,050 + HP15_p187g159 0.64 +0.1 162,058 - HP15_p187g159 0.64 -0.9 162,085 - HP15_p187g159 0.66 -1.0 162,107 + HP15_p187g159 0.67 -0.5 162,107 + HP15_p187g159 0.67 +1.7 162,107 + HP15_p187g159 0.67 +0.7 162,115 - HP15_p187g159 0.67 -0.3 162,121 + HP15_p187g159 0.67 -1.0 162,285 + HP15_p187g159 0.74 +0.2 162,286 - HP15_p187g159 0.74 +1.6 162,293 - HP15_p187g159 0.74 +0.2 162,295 + HP15_p187g159 0.75 +2.9 162,297 + HP15_p187g159 0.75 -1.8 162,297 + HP15_p187g159 0.75 +2.3 162,354 + HP15_p187g159 0.77 +2.2 162,362 - HP15_p187g159 0.77 +1.1 162,406 + HP15_p187g159 0.79 +2.0 162,416 + HP15_p187g159 0.80 +1.7 162,428 - HP15_p187g159 0.80 +1.9 162,447 + HP15_p187g159 0.81 -0.9 162,447 + HP15_p187g159 0.81 +2.1 162,455 - HP15_p187g159 0.81 -0.2 162,455 - HP15_p187g159 0.81 +2.0 162,455 - HP15_p187g159 0.81 -0.3 162,455 - HP15_p187g159 0.81 +1.7 162,455 - HP15_p187g159 0.81 +1.2 162,469 + HP15_p187g159 0.82 +2.0 162,516 + HP15_p187g159 0.84 +0.2 162,521 + HP15_p187g159 0.84 -0.5 162,564 - HP15_p187g159 0.86 -0.4 162,628 + HP15_p187g159 0.89 +1.6 162,636 - HP15_p187g159 0.89 -0.9 162,672 + -1.0 162,691 + -0.2 162,695 + -0.2 162,699 - -0.3 162,699 - -0.8 162,699 - +0.6 162,704 - -0.6 162,731 + +2.4 162,745 + +1.2 162,759 - +1.8 162,770 + -0.9 162,794 - -1.2 162,802 - +1.3 162,802 - -0.5 162,835 - -1.1 162,914 + -1.7 162,914 + -0.4 162,919 + +0.0 162,919 + -3.3 162,927 - -0.9 162,927 - +1.5 162,927 - -0.2 162,965 - HP15_p187g160 0.11 -0.9 162,981 + HP15_p187g160 0.14 +1.0 162,989 - HP15_p187g160 0.15 +0.8 163,016 + HP15_p187g160 0.20 +1.5 163,023 + HP15_p187g160 0.21 +1.3 163,023 + HP15_p187g160 0.21 +2.8 163,023 + HP15_p187g160 0.21 +1.8 163,023 + HP15_p187g160 0.21 -1.3 163,028 + HP15_p187g160 0.22 -0.2 163,031 - HP15_p187g160 0.23 +0.9 163,031 - HP15_p187g160 0.23 -1.4 163,031 - HP15_p187g160 0.23 +0.1 163,062 + HP15_p187g160 0.28 +2.1 163,100 - HP15_p187g160 0.35 +0.4 163,104 + HP15_p187g160 0.36 -1.7 163,112 - HP15_p187g160 0.37 -1.2 163,140 + HP15_p187g160 0.42 +0.2 163,148 - HP15_p187g160 0.44 -0.2 163,238 + HP15_p187g160 0.60 +1.8 163,248 - HP15_p187g160 0.62 -0.7 163,300 + HP15_p187g160 0.71 -2.4 163,335 + HP15_p187g160 0.78 -1.1 163,340 + HP15_p187g160 0.79 -0.6 163,343 - HP15_p187g160 0.79 +1.7 163,343 - HP15_p187g160 0.79 +1.6 163,343 - HP15_p187g160 0.79 -1.0 163,344 + HP15_p187g160 0.79 +0.0 163,345 + HP15_p187g160 0.80 +0.0 163,353 - HP15_p187g160 0.81 -0.5 163,357 + HP15_p187g160 0.82 -0.4 163,377 + HP15_p187g160 0.85 -0.2 163,378 - HP15_p187g160 0.86 -1.0 163,407 + +0.3 163,486 + -1.9 163,487 - +1.0 163,494 - +0.9 163,560 + +2.5 163,560 + -0.8 163,568 - +2.7 163,628 + -0.1 163,715 - -2.0 163,738 + +0.8 163,776 + +1.3 163,784 - -0.8 163,789 - -1.3 163,806 - +1.4 163,846 - +1.9 163,868 - +0.2
Or see this region's nucleotide sequence