Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g91 and HP15_p187g92 are separated by 151 nucleotides HP15_p187g92 and HP15_p187g93 are separated by 182 nucleotides HP15_p187g93 and HP15_p187g94 are separated by 193 nucleotides
HP15_p187g91: HP15_p187g91 - protein containing chemotaxis methyl-accepting receptor, signaling, PAS fold protein, at 87,261 to 88,886
_p187g91
HP15_p187g92: HP15_p187g92 - hypothetical protein, at 89,038 to 89,142
_p187g92
HP15_p187g93: HP15_p187g93 - transcriptional activator RfaH, at 89,325 to 89,762
_p187g93
HP15_p187g94: HP15_p187g94 - radical SAM domain protein, at 89,956 to 91,000
_p187g94
Position (kb) 89
90 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 88.041 kb on - strand, within HP15_p187g91 at 88.043 kb on - strand, within HP15_p187g91 at 88.083 kb on + strand, within HP15_p187g91 at 88.083 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.096 kb on - strand, within HP15_p187g91 at 88.096 kb on - strand, within HP15_p187g91 at 88.096 kb on - strand, within HP15_p187g91 at 88.096 kb on - strand, within HP15_p187g91 at 88.110 kb on + strand, within HP15_p187g91 at 88.118 kb on - strand, within HP15_p187g91 at 88.178 kb on + strand, within HP15_p187g91 at 88.222 kb on + strand, within HP15_p187g91 at 88.222 kb on + strand, within HP15_p187g91 at 88.222 kb on + strand, within HP15_p187g91 at 88.230 kb on - strand, within HP15_p187g91 at 88.250 kb on - strand, within HP15_p187g91 at 88.255 kb on + strand, within HP15_p187g91 at 88.321 kb on + strand, within HP15_p187g91 at 88.358 kb on + strand, within HP15_p187g91 at 88.358 kb on + strand, within HP15_p187g91 at 88.359 kb on + strand, within HP15_p187g91 at 88.359 kb on + strand, within HP15_p187g91 at 88.359 kb on + strand, within HP15_p187g91 at 88.364 kb on + strand, within HP15_p187g91 at 88.366 kb on - strand, within HP15_p187g91 at 88.367 kb on - strand, within HP15_p187g91 at 88.393 kb on - strand, within HP15_p187g91 at 88.398 kb on + strand, within HP15_p187g91 at 88.406 kb on + strand, within HP15_p187g91 at 88.406 kb on + strand, within HP15_p187g91 at 88.409 kb on + strand, within HP15_p187g91 at 88.409 kb on + strand, within HP15_p187g91 at 88.414 kb on - strand, within HP15_p187g91 at 88.414 kb on - strand, within HP15_p187g91 at 88.414 kb on - strand, within HP15_p187g91 at 88.414 kb on - strand, within HP15_p187g91 at 88.417 kb on - strand, within HP15_p187g91 at 88.417 kb on - strand, within HP15_p187g91 at 88.453 kb on + strand, within HP15_p187g91 at 88.660 kb on + strand, within HP15_p187g91 at 88.660 kb on + strand, within HP15_p187g91 at 88.660 kb on + strand, within HP15_p187g91 at 88.668 kb on - strand, within HP15_p187g91 at 88.674 kb on + strand, within HP15_p187g91 at 88.682 kb on + strand, within HP15_p187g91 at 88.682 kb on + strand, within HP15_p187g91 at 88.732 kb on + strand at 88.740 kb on - strand at 88.740 kb on - strand at 88.740 kb on - strand at 88.769 kb on + strand at 88.777 kb on - strand at 88.777 kb on - strand at 88.777 kb on - strand at 88.787 kb on - strand at 88.911 kb on - strand at 88.951 kb on + strand at 88.951 kb on + strand at 88.981 kb on + strand at 88.981 kb on + strand at 88.989 kb on - strand at 88.989 kb on - strand at 88.989 kb on - strand at 88.994 kb on + strand at 89.067 kb on + strand, within HP15_p187g92 at 89.074 kb on - strand, within HP15_p187g92 at 89.095 kb on - strand, within HP15_p187g92 at 89.099 kb on + strand, within HP15_p187g92 at 89.099 kb on + strand, within HP15_p187g92 at 89.107 kb on - strand, within HP15_p187g92 at 89.143 kb on + strand at 89.147 kb on + strand at 89.203 kb on - strand at 89.206 kb on + strand at 89.213 kb on + strand at 89.219 kb on - strand at 89.220 kb on + strand at 89.243 kb on - strand at 89.256 kb on - strand at 89.290 kb on - strand at 89.337 kb on + strand at 89.383 kb on + strand, within HP15_p187g93 at 89.393 kb on + strand, within HP15_p187g93 at 89.401 kb on - strand, within HP15_p187g93 at 89.401 kb on - strand, within HP15_p187g93 at 89.414 kb on - strand, within HP15_p187g93 at 89.422 kb on + strand, within HP15_p187g93 at 89.451 kb on - strand, within HP15_p187g93 at 89.482 kb on + strand, within HP15_p187g93 at 89.501 kb on - strand, within HP15_p187g93 at 89.505 kb on + strand, within HP15_p187g93 at 89.554 kb on - strand, within HP15_p187g93 at 89.554 kb on - strand, within HP15_p187g93 at 89.603 kb on + strand, within HP15_p187g93 at 89.669 kb on + strand, within HP15_p187g93 at 89.676 kb on - strand, within HP15_p187g93 at 89.698 kb on - strand, within HP15_p187g93 at 89.782 kb on + strand at 89.782 kb on + strand at 89.782 kb on + strand at 89.785 kb on - strand at 89.785 kb on - strand at 89.790 kb on - strand at 89.790 kb on - strand at 89.790 kb on - strand at 89.823 kb on + strand at 89.823 kb on + strand at 89.823 kb on + strand at 89.836 kb on - strand at 89.914 kb on + strand at 89.916 kb on + strand at 89.941 kb on + strand at 89.951 kb on + strand at 89.951 kb on + strand at 89.951 kb on + strand at 89.951 kb on + strand at 89.951 kb on + strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.973 kb on + strand at 90.024 kb on + strand at 90.032 kb on - strand at 90.044 kb on + strand at 90.111 kb on + strand, within HP15_p187g94 at 90.138 kb on + strand, within HP15_p187g94 at 90.138 kb on + strand, within HP15_p187g94 at 90.138 kb on + strand, within HP15_p187g94 at 90.138 kb on + strand, within HP15_p187g94
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 88,041 - HP15_p187g91 0.48 +0.2 88,043 - HP15_p187g91 0.48 +1.0 88,083 + HP15_p187g91 0.51 +0.8 88,083 + HP15_p187g91 0.51 -0.7 88,088 + HP15_p187g91 0.51 -0.5 88,088 + HP15_p187g91 0.51 -2.2 88,088 + HP15_p187g91 0.51 +0.1 88,088 + HP15_p187g91 0.51 +0.2 88,088 + HP15_p187g91 0.51 +2.6 88,088 + HP15_p187g91 0.51 +2.4 88,096 - HP15_p187g91 0.51 -1.7 88,096 - HP15_p187g91 0.51 +1.6 88,096 - HP15_p187g91 0.51 +3.3 88,096 - HP15_p187g91 0.51 +1.5 88,110 + HP15_p187g91 0.52 -1.8 88,118 - HP15_p187g91 0.53 -0.7 88,178 + HP15_p187g91 0.56 -0.2 88,222 + HP15_p187g91 0.59 +2.3 88,222 + HP15_p187g91 0.59 +1.4 88,222 + HP15_p187g91 0.59 +1.7 88,230 - HP15_p187g91 0.60 -0.8 88,250 - HP15_p187g91 0.61 +1.8 88,255 + HP15_p187g91 0.61 +0.9 88,321 + HP15_p187g91 0.65 +1.2 88,358 + HP15_p187g91 0.67 -1.2 88,358 + HP15_p187g91 0.67 +0.2 88,359 + HP15_p187g91 0.68 +1.7 88,359 + HP15_p187g91 0.68 +0.7 88,359 + HP15_p187g91 0.68 +2.0 88,364 + HP15_p187g91 0.68 +0.1 88,366 - HP15_p187g91 0.68 +0.1 88,367 - HP15_p187g91 0.68 +1.5 88,393 - HP15_p187g91 0.70 +2.1 88,398 + HP15_p187g91 0.70 +2.5 88,406 + HP15_p187g91 0.70 -1.1 88,406 + HP15_p187g91 0.70 -0.3 88,409 + HP15_p187g91 0.71 +0.5 88,409 + HP15_p187g91 0.71 -0.5 88,414 - HP15_p187g91 0.71 -0.5 88,414 - HP15_p187g91 0.71 +0.2 88,414 - HP15_p187g91 0.71 +0.3 88,414 - HP15_p187g91 0.71 -0.6 88,417 - HP15_p187g91 0.71 +0.5 88,417 - HP15_p187g91 0.71 -0.4 88,453 + HP15_p187g91 0.73 -0.5 88,660 + HP15_p187g91 0.86 +0.3 88,660 + HP15_p187g91 0.86 +3.4 88,660 + HP15_p187g91 0.86 +1.8 88,668 - HP15_p187g91 0.87 +2.0 88,674 + HP15_p187g91 0.87 -2.7 88,682 + HP15_p187g91 0.87 -0.9 88,682 + HP15_p187g91 0.87 +1.8 88,732 + -1.8 88,740 - +1.6 88,740 - +0.5 88,740 - +0.8 88,769 + +1.4 88,777 - -1.1 88,777 - +1.7 88,777 - -0.7 88,787 - -0.2 88,911 - -0.6 88,951 + -0.6 88,951 + +1.7 88,981 + +1.8 88,981 + -0.5 88,989 - -0.2 88,989 - -0.3 88,989 - +1.1 88,994 + +1.3 89,067 + HP15_p187g92 0.28 +1.5 89,074 - HP15_p187g92 0.34 -0.2 89,095 - HP15_p187g92 0.54 +3.8 89,099 + HP15_p187g92 0.58 -0.2 89,099 + HP15_p187g92 0.58 +0.0 89,107 - HP15_p187g92 0.66 -0.0 89,143 + +1.5 89,147 + -1.0 89,203 - -0.1 89,206 + -1.2 89,213 + -0.5 89,219 - +1.7 89,220 + +0.0 89,243 - +0.7 89,256 - -0.8 89,290 - -0.9 89,337 + +1.6 89,383 + HP15_p187g93 0.13 +0.0 89,393 + HP15_p187g93 0.16 +0.8 89,401 - HP15_p187g93 0.17 -1.5 89,401 - HP15_p187g93 0.17 +2.4 89,414 - HP15_p187g93 0.20 -0.3 89,422 + HP15_p187g93 0.22 +2.8 89,451 - HP15_p187g93 0.29 -0.6 89,482 + HP15_p187g93 0.36 +2.1 89,501 - HP15_p187g93 0.40 +0.0 89,505 + HP15_p187g93 0.41 +1.3 89,554 - HP15_p187g93 0.52 -1.6 89,554 - HP15_p187g93 0.52 +0.1 89,603 + HP15_p187g93 0.63 +0.5 89,669 + HP15_p187g93 0.79 +1.6 89,676 - HP15_p187g93 0.80 +2.2 89,698 - HP15_p187g93 0.85 +1.7 89,782 + +0.7 89,782 + +2.2 89,782 + +0.7 89,785 - +1.3 89,785 - -0.4 89,790 - +1.3 89,790 - -2.3 89,790 - -1.5 89,823 + +2.2 89,823 + +1.5 89,823 + -0.2 89,836 - +1.2 89,914 + -1.0 89,916 + +0.6 89,941 + -0.9 89,951 + -0.2 89,951 + -2.0 89,951 + +1.4 89,951 + +2.7 89,951 + +1.9 89,959 - -0.3 89,959 - +1.0 89,959 - +2.0 89,959 - -1.3 89,959 - +1.2 89,959 - -1.5 89,959 - +0.7 89,973 + +0.4 90,024 + +1.8 90,032 - +0.1 90,044 + -1.6 90,111 + HP15_p187g94 0.15 -2.0 90,138 + HP15_p187g94 0.17 -0.0 90,138 + HP15_p187g94 0.17 -0.8 90,138 + HP15_p187g94 0.17 +1.5 90,138 + HP15_p187g94 0.17 +0.5
Or see this region's nucleotide sequence