Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g62 and HP15_p187g63 are separated by 45 nucleotides HP15_p187g63 and HP15_p187g64 are separated by 9 nucleotides HP15_p187g64 and HP15_p187g65 are separated by 3 nucleotides HP15_p187g65 and HP15_p187g66 are separated by 68 nucleotides
HP15_p187g62: HP15_p187g62 - acetyltransferase, at 56,945 to 57,928
_p187g62
HP15_p187g63: HP15_p187g63 - secreted protein, at 57,974 to 58,090
_p187g63
HP15_p187g64: HP15_p187g64 - hypothetical protein, at 58,100 to 58,204
_p187g64
HP15_p187g65: HP15_p187g65 - protein containing DUF218, at 58,208 to 58,687
_p187g65
HP15_p187g66: HP15_p187g66 - UDP-glucose 4-epimerase, at 58,756 to 59,787
_p187g66
Position (kb) 58
59 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 57.162 kb on + strand, within HP15_p187g62 at 57.167 kb on + strand, within HP15_p187g62 at 57.237 kb on + strand, within HP15_p187g62 at 57.245 kb on - strand, within HP15_p187g62 at 57.245 kb on - strand, within HP15_p187g62 at 57.245 kb on - strand, within HP15_p187g62 at 57.245 kb on - strand, within HP15_p187g62 at 57.247 kb on + strand, within HP15_p187g62 at 57.250 kb on + strand, within HP15_p187g62 at 57.255 kb on - strand, within HP15_p187g62 at 57.262 kb on + strand, within HP15_p187g62 at 57.262 kb on + strand, within HP15_p187g62 at 57.270 kb on - strand, within HP15_p187g62 at 57.270 kb on - strand, within HP15_p187g62 at 57.272 kb on - strand, within HP15_p187g62 at 57.279 kb on - strand, within HP15_p187g62 at 57.279 kb on - strand, within HP15_p187g62 at 57.279 kb on - strand, within HP15_p187g62 at 57.280 kb on + strand, within HP15_p187g62 at 57.361 kb on + strand, within HP15_p187g62 at 57.402 kb on + strand, within HP15_p187g62 at 57.402 kb on + strand, within HP15_p187g62 at 57.402 kb on + strand, within HP15_p187g62 at 57.410 kb on - strand, within HP15_p187g62 at 57.424 kb on - strand, within HP15_p187g62 at 57.446 kb on - strand, within HP15_p187g62 at 57.468 kb on - strand, within HP15_p187g62 at 57.489 kb on + strand, within HP15_p187g62 at 57.551 kb on + strand, within HP15_p187g62 at 57.583 kb on + strand, within HP15_p187g62 at 57.583 kb on + strand, within HP15_p187g62 at 57.583 kb on + strand, within HP15_p187g62 at 57.583 kb on + strand, within HP15_p187g62 at 57.591 kb on - strand, within HP15_p187g62 at 57.591 kb on - strand, within HP15_p187g62 at 57.593 kb on + strand, within HP15_p187g62 at 57.596 kb on - strand, within HP15_p187g62 at 57.601 kb on - strand, within HP15_p187g62 at 57.607 kb on - strand, within HP15_p187g62 at 57.641 kb on - strand, within HP15_p187g62 at 57.673 kb on - strand, within HP15_p187g62 at 57.683 kb on + strand, within HP15_p187g62 at 57.683 kb on + strand, within HP15_p187g62 at 57.693 kb on + strand, within HP15_p187g62 at 57.711 kb on + strand, within HP15_p187g62 at 57.711 kb on + strand, within HP15_p187g62 at 57.719 kb on - strand, within HP15_p187g62 at 57.719 kb on - strand, within HP15_p187g62 at 57.729 kb on - strand, within HP15_p187g62 at 57.739 kb on - strand, within HP15_p187g62 at 57.748 kb on - strand, within HP15_p187g62 at 57.892 kb on + strand at 57.900 kb on + strand at 57.900 kb on + strand at 57.900 kb on + strand at 57.900 kb on + strand at 57.908 kb on - strand at 57.917 kb on + strand at 57.917 kb on + strand at 57.925 kb on - strand at 57.925 kb on - strand at 57.955 kb on + strand at 57.955 kb on + strand at 57.962 kb on - strand at 57.963 kb on - strand at 58.030 kb on - strand, within HP15_p187g63 at 58.030 kb on - strand, within HP15_p187g63 at 58.052 kb on + strand, within HP15_p187g63 at 58.086 kb on - strand at 58.104 kb on - strand at 58.121 kb on + strand, within HP15_p187g64 at 58.139 kb on + strand, within HP15_p187g64 at 58.139 kb on + strand, within HP15_p187g64 at 58.147 kb on - strand, within HP15_p187g64 at 58.147 kb on - strand, within HP15_p187g64 at 58.147 kb on - strand, within HP15_p187g64 at 58.193 kb on + strand, within HP15_p187g64 at 58.198 kb on + strand at 58.201 kb on - strand at 58.206 kb on - strand at 58.213 kb on - strand at 58.242 kb on - strand at 58.312 kb on - strand, within HP15_p187g65 at 58.339 kb on + strand, within HP15_p187g65 at 58.339 kb on + strand, within HP15_p187g65 at 58.351 kb on + strand, within HP15_p187g65 at 58.359 kb on - strand, within HP15_p187g65 at 58.359 kb on - strand, within HP15_p187g65 at 58.399 kb on + strand, within HP15_p187g65 at 58.399 kb on + strand, within HP15_p187g65 at 58.407 kb on - strand, within HP15_p187g65 at 58.407 kb on - strand, within HP15_p187g65 at 58.409 kb on - strand, within HP15_p187g65 at 58.425 kb on + strand, within HP15_p187g65 at 58.449 kb on + strand, within HP15_p187g65 at 58.455 kb on - strand, within HP15_p187g65 at 58.477 kb on - strand, within HP15_p187g65 at 58.498 kb on - strand, within HP15_p187g65 at 58.529 kb on + strand, within HP15_p187g65 at 58.541 kb on + strand, within HP15_p187g65 at 58.556 kb on - strand, within HP15_p187g65 at 58.562 kb on - strand, within HP15_p187g65 at 58.572 kb on - strand, within HP15_p187g65 at 58.583 kb on + strand, within HP15_p187g65 at 58.583 kb on - strand, within HP15_p187g65 at 58.604 kb on - strand, within HP15_p187g65 at 58.607 kb on + strand, within HP15_p187g65 at 58.616 kb on + strand, within HP15_p187g65 at 58.623 kb on + strand, within HP15_p187g65 at 58.624 kb on - strand, within HP15_p187g65 at 58.624 kb on - strand, within HP15_p187g65 at 58.628 kb on + strand, within HP15_p187g65 at 58.633 kb on + strand, within HP15_p187g65 at 58.641 kb on - strand at 58.813 kb on + strand at 58.853 kb on + strand at 58.888 kb on - strand, within HP15_p187g66 at 58.924 kb on + strand, within HP15_p187g66 at 58.945 kb on + strand, within HP15_p187g66 at 58.960 kb on - strand, within HP15_p187g66 at 58.961 kb on + strand, within HP15_p187g66 at 58.961 kb on + strand, within HP15_p187g66 at 58.969 kb on - strand, within HP15_p187g66 at 58.980 kb on + strand, within HP15_p187g66 at 58.983 kb on + strand, within HP15_p187g66 at 58.986 kb on + strand, within HP15_p187g66 at 58.986 kb on + strand, within HP15_p187g66 at 58.993 kb on - strand, within HP15_p187g66 at 59.021 kb on + strand, within HP15_p187g66 at 59.036 kb on - strand, within HP15_p187g66 at 59.038 kb on + strand, within HP15_p187g66 at 59.038 kb on + strand, within HP15_p187g66 at 59.046 kb on - strand, within HP15_p187g66 at 59.046 kb on - strand, within HP15_p187g66 at 59.051 kb on - strand, within HP15_p187g66 at 59.063 kb on - strand, within HP15_p187g66 at 59.073 kb on - strand, within HP15_p187g66 at 59.073 kb on - strand, within HP15_p187g66 at 59.087 kb on + strand, within HP15_p187g66 at 59.129 kb on - strand, within HP15_p187g66 at 59.172 kb on + strand, within HP15_p187g66 at 59.181 kb on - strand, within HP15_p187g66 at 59.188 kb on + strand, within HP15_p187g66 at 59.190 kb on + strand, within HP15_p187g66 at 59.195 kb on + strand, within HP15_p187g66 at 59.195 kb on + strand, within HP15_p187g66
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 57,162 + HP15_p187g62 0.22 +0.4 57,167 + HP15_p187g62 0.23 +1.4 57,237 + HP15_p187g62 0.30 +1.5 57,245 - HP15_p187g62 0.30 +1.8 57,245 - HP15_p187g62 0.30 -0.3 57,245 - HP15_p187g62 0.30 -0.8 57,245 - HP15_p187g62 0.30 -0.3 57,247 + HP15_p187g62 0.31 +1.7 57,250 + HP15_p187g62 0.31 +2.1 57,255 - HP15_p187g62 0.32 +2.6 57,262 + HP15_p187g62 0.32 +1.4 57,262 + HP15_p187g62 0.32 -2.1 57,270 - HP15_p187g62 0.33 +1.9 57,270 - HP15_p187g62 0.33 -0.4 57,272 - HP15_p187g62 0.33 +0.7 57,279 - HP15_p187g62 0.34 -1.5 57,279 - HP15_p187g62 0.34 -0.8 57,279 - HP15_p187g62 0.34 -1.0 57,280 + HP15_p187g62 0.34 +1.9 57,361 + HP15_p187g62 0.42 -0.7 57,402 + HP15_p187g62 0.46 +0.0 57,402 + HP15_p187g62 0.46 -0.3 57,402 + HP15_p187g62 0.46 -0.7 57,410 - HP15_p187g62 0.47 -0.6 57,424 - HP15_p187g62 0.49 -1.2 57,446 - HP15_p187g62 0.51 -0.9 57,468 - HP15_p187g62 0.53 +1.6 57,489 + HP15_p187g62 0.55 -0.3 57,551 + HP15_p187g62 0.62 -0.0 57,583 + HP15_p187g62 0.65 +1.2 57,583 + HP15_p187g62 0.65 -0.4 57,583 + HP15_p187g62 0.65 +0.6 57,583 + HP15_p187g62 0.65 -0.1 57,591 - HP15_p187g62 0.66 -1.0 57,591 - HP15_p187g62 0.66 -1.8 57,593 + HP15_p187g62 0.66 +0.5 57,596 - HP15_p187g62 0.66 -1.1 57,601 - HP15_p187g62 0.67 -0.3 57,607 - HP15_p187g62 0.67 +1.4 57,641 - HP15_p187g62 0.71 -1.5 57,673 - HP15_p187g62 0.74 +1.6 57,683 + HP15_p187g62 0.75 +0.2 57,683 + HP15_p187g62 0.75 -0.4 57,693 + HP15_p187g62 0.76 +1.8 57,711 + HP15_p187g62 0.78 -0.6 57,711 + HP15_p187g62 0.78 +0.2 57,719 - HP15_p187g62 0.79 -0.6 57,719 - HP15_p187g62 0.79 +2.1 57,729 - HP15_p187g62 0.80 +1.2 57,739 - HP15_p187g62 0.81 -0.5 57,748 - HP15_p187g62 0.82 +0.2 57,892 + +0.1 57,900 + -0.8 57,900 + +0.3 57,900 + -0.8 57,900 + -2.1 57,908 - -0.5 57,917 + +1.4 57,917 + +0.0 57,925 - +0.6 57,925 - -0.3 57,955 + -1.7 57,955 + +0.6 57,962 - -0.4 57,963 - -1.0 58,030 - HP15_p187g63 0.48 -0.8 58,030 - HP15_p187g63 0.48 -0.1 58,052 + HP15_p187g63 0.67 +2.3 58,086 - -0.7 58,104 - -2.5 58,121 + HP15_p187g64 0.20 -0.7 58,139 + HP15_p187g64 0.37 -0.4 58,139 + HP15_p187g64 0.37 -0.7 58,147 - HP15_p187g64 0.45 +1.3 58,147 - HP15_p187g64 0.45 +1.2 58,147 - HP15_p187g64 0.45 -0.1 58,193 + HP15_p187g64 0.89 -0.0 58,198 + -0.4 58,201 - +1.4 58,206 - -1.5 58,213 - -0.7 58,242 - -0.3 58,312 - HP15_p187g65 0.22 -1.3 58,339 + HP15_p187g65 0.27 +1.1 58,339 + HP15_p187g65 0.27 +2.0 58,351 + HP15_p187g65 0.30 +1.9 58,359 - HP15_p187g65 0.31 +1.8 58,359 - HP15_p187g65 0.31 -0.7 58,399 + HP15_p187g65 0.40 -1.7 58,399 + HP15_p187g65 0.40 -0.1 58,407 - HP15_p187g65 0.41 +3.3 58,407 - HP15_p187g65 0.41 -0.4 58,409 - HP15_p187g65 0.42 -0.9 58,425 + HP15_p187g65 0.45 +0.8 58,449 + HP15_p187g65 0.50 -0.9 58,455 - HP15_p187g65 0.51 -0.8 58,477 - HP15_p187g65 0.56 +1.0 58,498 - HP15_p187g65 0.60 +0.3 58,529 + HP15_p187g65 0.67 +1.5 58,541 + HP15_p187g65 0.69 +0.9 58,556 - HP15_p187g65 0.72 +0.1 58,562 - HP15_p187g65 0.74 -0.9 58,572 - HP15_p187g65 0.76 -0.4 58,583 + HP15_p187g65 0.78 +0.2 58,583 - HP15_p187g65 0.78 +0.8 58,604 - HP15_p187g65 0.82 +4.0 58,607 + HP15_p187g65 0.83 +0.1 58,616 + HP15_p187g65 0.85 -0.2 58,623 + HP15_p187g65 0.86 -1.0 58,624 - HP15_p187g65 0.87 -0.0 58,624 - HP15_p187g65 0.87 -1.2 58,628 + HP15_p187g65 0.88 +0.3 58,633 + HP15_p187g65 0.89 -0.3 58,641 - -0.5 58,813 + -1.0 58,853 + +1.9 58,888 - HP15_p187g66 0.13 -0.4 58,924 + HP15_p187g66 0.16 -2.1 58,945 + HP15_p187g66 0.18 -0.3 58,960 - HP15_p187g66 0.20 -1.7 58,961 + HP15_p187g66 0.20 +0.1 58,961 + HP15_p187g66 0.20 -0.3 58,969 - HP15_p187g66 0.21 +1.1 58,980 + HP15_p187g66 0.22 +0.3 58,983 + HP15_p187g66 0.22 -1.0 58,986 + HP15_p187g66 0.22 -1.1 58,986 + HP15_p187g66 0.22 -1.0 58,993 - HP15_p187g66 0.23 +1.3 59,021 + HP15_p187g66 0.26 -0.4 59,036 - HP15_p187g66 0.27 -1.9 59,038 + HP15_p187g66 0.27 -1.3 59,038 + HP15_p187g66 0.27 +2.6 59,046 - HP15_p187g66 0.28 -0.2 59,046 - HP15_p187g66 0.28 +1.3 59,051 - HP15_p187g66 0.29 -0.6 59,063 - HP15_p187g66 0.30 +1.4 59,073 - HP15_p187g66 0.31 -0.8 59,073 - HP15_p187g66 0.31 +0.4 59,087 + HP15_p187g66 0.32 -0.7 59,129 - HP15_p187g66 0.36 +1.3 59,172 + HP15_p187g66 0.40 +1.9 59,181 - HP15_p187g66 0.41 -0.2 59,188 + HP15_p187g66 0.42 +1.7 59,190 + HP15_p187g66 0.42 -0.7 59,195 + HP15_p187g66 0.43 +0.6 59,195 + HP15_p187g66 0.43 -1.4
Or see this region's nucleotide sequence