Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_413 and HP15_414 are separated by 1 nucleotides HP15_414 and HP15_415 overlap by 4 nucleotides HP15_415 and HP15_416 overlap by 4 nucleotides
HP15_413: HP15_413 - pilus (MSHA type) biogenesis protein MshL, at 407,709 to 409,422
_413
HP15_414: HP15_414 - general secretion pathway protein, ATPase, at 409,424 to 410,263
_414
HP15_415: HP15_415 - TPR repeat protein, at 410,260 to 411,402
_415
HP15_416: HP15_416 - type IV-A pilus assembly ATPase PilB, at 411,399 to 413,171
_416
Position (kb) 410
411
412 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 409.387 kb on - strand at 409.525 kb on + strand, within HP15_414 at 409.554 kb on - strand, within HP15_414 at 409.670 kb on - strand, within HP15_414 at 409.781 kb on - strand, within HP15_414 at 409.824 kb on - strand, within HP15_414 at 409.825 kb on - strand, within HP15_414 at 409.899 kb on - strand, within HP15_414 at 409.915 kb on + strand, within HP15_414 at 410.058 kb on + strand, within HP15_414 at 410.159 kb on + strand, within HP15_414 at 410.235 kb on + strand at 410.288 kb on + strand at 410.288 kb on + strand at 410.307 kb on - strand at 410.401 kb on + strand, within HP15_415 at 410.467 kb on - strand, within HP15_415 at 410.467 kb on - strand, within HP15_415 at 410.642 kb on + strand, within HP15_415 at 410.726 kb on - strand, within HP15_415 at 410.783 kb on - strand, within HP15_415 at 410.785 kb on + strand, within HP15_415 at 410.793 kb on - strand, within HP15_415 at 410.890 kb on + strand, within HP15_415 at 411.055 kb on - strand, within HP15_415 at 411.072 kb on - strand, within HP15_415 at 411.084 kb on + strand, within HP15_415 at 411.115 kb on - strand, within HP15_415 at 411.213 kb on - strand, within HP15_415 at 411.275 kb on + strand, within HP15_415 at 411.350 kb on - strand at 411.532 kb on + strand at 411.560 kb on - strand at 411.560 kb on - strand at 411.574 kb on - strand at 411.665 kb on - strand, within HP15_416 at 411.679 kb on + strand, within HP15_416 at 411.703 kb on - strand, within HP15_416 at 411.774 kb on - strand, within HP15_416 at 411.810 kb on + strand, within HP15_416 at 411.812 kb on + strand, within HP15_416 at 411.885 kb on - strand, within HP15_416 at 411.997 kb on + strand, within HP15_416 at 412.159 kb on - strand, within HP15_416 at 412.198 kb on + strand, within HP15_416 at 412.211 kb on + strand, within HP15_416 at 412.219 kb on - strand, within HP15_416 at 412.288 kb on - strand, within HP15_416 at 412.311 kb on - strand, within HP15_416
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 409,387 - +3.5 409,525 + HP15_414 0.12 +0.7 409,554 - HP15_414 0.15 +1.6 409,670 - HP15_414 0.29 +0.6 409,781 - HP15_414 0.42 +0.2 409,824 - HP15_414 0.48 +1.3 409,825 - HP15_414 0.48 +1.9 409,899 - HP15_414 0.57 +1.0 409,915 + HP15_414 0.58 +1.5 410,058 + HP15_414 0.75 +0.5 410,159 + HP15_414 0.88 -1.0 410,235 + +2.2 410,288 + +0.7 410,288 + +3.0 410,307 - +1.0 410,401 + HP15_415 0.12 +0.1 410,467 - HP15_415 0.18 +0.6 410,467 - HP15_415 0.18 +1.3 410,642 + HP15_415 0.33 +0.6 410,726 - HP15_415 0.41 +2.7 410,783 - HP15_415 0.46 +2.2 410,785 + HP15_415 0.46 +1.6 410,793 - HP15_415 0.47 +1.5 410,890 + HP15_415 0.55 +2.9 411,055 - HP15_415 0.70 +0.9 411,072 - HP15_415 0.71 +2.4 411,084 + HP15_415 0.72 +0.6 411,115 - HP15_415 0.75 +1.6 411,213 - HP15_415 0.83 +0.7 411,275 + HP15_415 0.89 -0.1 411,350 - -2.8 411,532 + +1.1 411,560 - -0.1 411,560 - +2.7 411,574 - +1.0 411,665 - HP15_416 0.15 +1.0 411,679 + HP15_416 0.16 +3.2 411,703 - HP15_416 0.17 +0.6 411,774 - HP15_416 0.21 +0.1 411,810 + HP15_416 0.23 +1.0 411,812 + HP15_416 0.23 +0.5 411,885 - HP15_416 0.27 +1.0 411,997 + HP15_416 0.34 +1.7 412,159 - HP15_416 0.43 +0.8 412,198 + HP15_416 0.45 +2.7 412,211 + HP15_416 0.46 +3.7 412,219 - HP15_416 0.46 +3.5 412,288 - HP15_416 0.50 +1.4 412,311 - HP15_416 0.51 +0.6
Or see this region's nucleotide sequence