Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4007 and HP15_4008 are separated by 22 nucleotides HP15_4008 and HP15_4009 are separated by 92 nucleotides HP15_4009 and HP15_4010 are separated by 2 nucleotides HP15_4010 and HP15_4011 are separated by 68 nucleotides
HP15_4007: HP15_4007 - ammonium transporter, at 4,243,181 to 4,244,389
_4007
HP15_4008: HP15_4008 - hypothetical protein, at 4,244,412 to 4,244,519
_4008
HP15_4009: HP15_4009 - flagellar motor protein MotB, at 4,244,612 to 4,245,535
_4009
HP15_4010: HP15_4010 - flagellar motor protein PomA, at 4,245,538 to 4,246,308
_4010
HP15_4011: HP15_4011 - protein containing DUF1232, at 4,246,377 to 4,246,796
_4011
Position (kb) 4244
4245
4246 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4243.706 kb on + strand, within HP15_4007 at 4243.742 kb on - strand, within HP15_4007 at 4243.746 kb on + strand, within HP15_4007 at 4243.765 kb on + strand, within HP15_4007 at 4243.765 kb on + strand, within HP15_4007 at 4243.789 kb on + strand, within HP15_4007 at 4243.804 kb on - strand, within HP15_4007 at 4243.893 kb on - strand, within HP15_4007 at 4243.904 kb on + strand, within HP15_4007 at 4243.918 kb on + strand, within HP15_4007 at 4243.958 kb on - strand, within HP15_4007 at 4244.016 kb on - strand, within HP15_4007 at 4244.034 kb on + strand, within HP15_4007 at 4244.203 kb on - strand, within HP15_4007 at 4244.226 kb on + strand, within HP15_4007 at 4244.232 kb on + strand, within HP15_4007 at 4244.240 kb on - strand, within HP15_4007 at 4244.357 kb on + strand at 4244.376 kb on + strand at 4244.376 kb on + strand at 4244.376 kb on - strand at 4244.392 kb on - strand at 4244.399 kb on + strand at 4244.583 kb on + strand at 4244.632 kb on + strand at 4244.734 kb on + strand, within HP15_4009 at 4244.792 kb on + strand, within HP15_4009 at 4244.909 kb on + strand, within HP15_4009 at 4244.988 kb on + strand, within HP15_4009 at 4245.140 kb on + strand, within HP15_4009 at 4245.243 kb on - strand, within HP15_4009 at 4245.308 kb on - strand, within HP15_4009 at 4245.341 kb on + strand, within HP15_4009 at 4245.375 kb on + strand, within HP15_4009 at 4245.431 kb on + strand, within HP15_4009 at 4245.618 kb on + strand, within HP15_4010 at 4245.638 kb on - strand, within HP15_4010 at 4245.683 kb on + strand, within HP15_4010 at 4245.693 kb on + strand, within HP15_4010 at 4245.757 kb on + strand, within HP15_4010 at 4245.815 kb on + strand, within HP15_4010 at 4245.861 kb on - strand, within HP15_4010 at 4245.988 kb on - strand, within HP15_4010 at 4246.139 kb on + strand, within HP15_4010 at 4246.445 kb on - strand, within HP15_4011 at 4246.458 kb on + strand, within HP15_4011
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 4,243,706 + HP15_4007 0.43 +1.5 4,243,742 - HP15_4007 0.46 -0.1 4,243,746 + HP15_4007 0.47 -0.2 4,243,765 + HP15_4007 0.48 -0.3 4,243,765 + HP15_4007 0.48 +4.0 4,243,789 + HP15_4007 0.50 +1.4 4,243,804 - HP15_4007 0.52 -0.7 4,243,893 - HP15_4007 0.59 +2.6 4,243,904 + HP15_4007 0.60 +1.9 4,243,918 + HP15_4007 0.61 +1.7 4,243,958 - HP15_4007 0.64 -0.5 4,244,016 - HP15_4007 0.69 -0.4 4,244,034 + HP15_4007 0.71 -0.3 4,244,203 - HP15_4007 0.85 -0.2 4,244,226 + HP15_4007 0.86 -0.5 4,244,232 + HP15_4007 0.87 +0.2 4,244,240 - HP15_4007 0.88 -0.1 4,244,357 + +0.9 4,244,376 + +2.5 4,244,376 + -2.8 4,244,376 - +1.8 4,244,392 - +1.0 4,244,399 + +2.0 4,244,583 + -0.4 4,244,632 + -0.0 4,244,734 + HP15_4009 0.13 +2.2 4,244,792 + HP15_4009 0.19 +0.3 4,244,909 + HP15_4009 0.32 +1.9 4,244,988 + HP15_4009 0.41 -0.9 4,245,140 + HP15_4009 0.57 +2.0 4,245,243 - HP15_4009 0.68 -4.1 4,245,308 - HP15_4009 0.75 +0.9 4,245,341 + HP15_4009 0.79 +1.4 4,245,375 + HP15_4009 0.83 +0.4 4,245,431 + HP15_4009 0.89 +1.9 4,245,618 + HP15_4010 0.10 +2.0 4,245,638 - HP15_4010 0.13 -0.8 4,245,683 + HP15_4010 0.19 +0.3 4,245,693 + HP15_4010 0.20 +0.8 4,245,757 + HP15_4010 0.28 +2.5 4,245,815 + HP15_4010 0.36 +1.9 4,245,861 - HP15_4010 0.42 +0.7 4,245,988 - HP15_4010 0.58 +2.4 4,246,139 + HP15_4010 0.78 +2.5 4,246,445 - HP15_4011 0.16 -1.3 4,246,458 + HP15_4011 0.19 -0.1
Or see this region's nucleotide sequence