Strain Fitness in Marinobacter adhaerens HP15 around HP15_3914

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3913 and HP15_3914 are separated by 73 nucleotidesHP15_3914 and HP15_3915 are separated by 110 nucleotides HP15_3913: HP15_3913 - multidrug resistance protein NorM, at 4,141,477 to 4,142,898 _3913 HP15_3914: HP15_3914 - carboxylate/amino acid/amine transporter, at 4,142,972 to 4,143,856 _3914 HP15_3915: HP15_3915 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 4,143,967 to 4,145,583 _3915 Position (kb) 4142 4143 4144Strain fitness (log2 ratio) -2 -1 0 1 2at 4142.364 kb on - strand, within HP15_3913at 4142.387 kb on - strand, within HP15_3913at 4142.478 kb on - strand, within HP15_3913at 4142.489 kb on + strand, within HP15_3913at 4142.497 kb on - strand, within HP15_3913at 4142.503 kb on - strand, within HP15_3913at 4142.614 kb on + strand, within HP15_3913at 4142.616 kb on + strand, within HP15_3913at 4142.817 kb on - strandat 4142.818 kb on + strandat 4142.831 kb on - strandat 4142.843 kb on + strandat 4142.888 kb on + strandat 4142.910 kb on - strandat 4142.910 kb on - strandat 4143.099 kb on + strand, within HP15_3914at 4143.154 kb on - strand, within HP15_3914at 4143.207 kb on - strand, within HP15_3914at 4143.234 kb on + strand, within HP15_3914at 4143.242 kb on + strand, within HP15_3914at 4143.273 kb on + strand, within HP15_3914at 4143.281 kb on - strand, within HP15_3914at 4143.480 kb on - strand, within HP15_3914at 4143.593 kb on - strand, within HP15_3914at 4143.627 kb on + strand, within HP15_3914at 4143.868 kb on + strandat 4143.868 kb on + strandat 4143.876 kb on - strandat 4143.876 kb on - strandat 4143.989 kb on - strandat 4144.025 kb on + strandat 4144.089 kb on - strandat 4144.197 kb on + strand, within HP15_3915at 4144.231 kb on - strand, within HP15_3915at 4144.238 kb on - strand, within HP15_3915at 4144.240 kb on + strand, within HP15_3915at 4144.248 kb on - strand, within HP15_3915at 4144.248 kb on - strand, within HP15_3915at 4144.281 kb on + strand, within HP15_3915at 4144.364 kb on + strand, within HP15_3915at 4144.504 kb on - strand, within HP15_3915at 4144.538 kb on + strand, within HP15_3915at 4144.565 kb on + strand, within HP15_3915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
remove
4,142,364 - HP15_3913 0.62 +0.3
4,142,387 - HP15_3913 0.64 -1.0
4,142,478 - HP15_3913 0.70 -2.5
4,142,489 + HP15_3913 0.71 +0.0
4,142,497 - HP15_3913 0.72 -0.5
4,142,503 - HP15_3913 0.72 +2.0
4,142,614 + HP15_3913 0.80 +1.4
4,142,616 + HP15_3913 0.80 -0.5
4,142,817 - -0.7
4,142,818 + +1.3
4,142,831 - +0.1
4,142,843 + +2.3
4,142,888 + +1.6
4,142,910 - -1.8
4,142,910 - -0.0
4,143,099 + HP15_3914 0.14 +1.4
4,143,154 - HP15_3914 0.21 +2.2
4,143,207 - HP15_3914 0.27 +0.9
4,143,234 + HP15_3914 0.30 +0.7
4,143,242 + HP15_3914 0.31 +1.7
4,143,273 + HP15_3914 0.34 -0.7
4,143,281 - HP15_3914 0.35 +2.2
4,143,480 - HP15_3914 0.57 -0.8
4,143,593 - HP15_3914 0.70 +1.7
4,143,627 + HP15_3914 0.74 +1.7
4,143,868 + +0.3
4,143,868 + -0.1
4,143,876 - +0.2
4,143,876 - -1.6
4,143,989 - -1.0
4,144,025 + +1.0
4,144,089 - +1.5
4,144,197 + HP15_3915 0.14 +1.1
4,144,231 - HP15_3915 0.16 +1.5
4,144,238 - HP15_3915 0.17 -0.6
4,144,240 + HP15_3915 0.17 -1.0
4,144,248 - HP15_3915 0.17 -1.3
4,144,248 - HP15_3915 0.17 -0.3
4,144,281 + HP15_3915 0.19 +0.8
4,144,364 + HP15_3915 0.25 +0.1
4,144,504 - HP15_3915 0.33 -0.4
4,144,538 + HP15_3915 0.35 +1.8
4,144,565 + HP15_3915 0.37 +0.1

Or see this region's nucleotide sequence