Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3913 and HP15_3914 are separated by 73 nucleotides HP15_3914 and HP15_3915 are separated by 110 nucleotides
HP15_3913: HP15_3913 - multidrug resistance protein NorM, at 4,141,477 to 4,142,898
_3913
HP15_3914: HP15_3914 - carboxylate/amino acid/amine transporter, at 4,142,972 to 4,143,856
_3914
HP15_3915: HP15_3915 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 4,143,967 to 4,145,583
_3915
Position (kb)
4142
4143
4144 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4142.364 kb on - strand, within HP15_3913 at 4142.387 kb on - strand, within HP15_3913 at 4142.478 kb on - strand, within HP15_3913 at 4142.489 kb on + strand, within HP15_3913 at 4142.497 kb on - strand, within HP15_3913 at 4142.503 kb on - strand, within HP15_3913 at 4142.614 kb on + strand, within HP15_3913 at 4142.616 kb on + strand, within HP15_3913 at 4142.817 kb on - strand at 4142.818 kb on + strand at 4142.831 kb on - strand at 4142.843 kb on + strand at 4142.888 kb on + strand at 4142.910 kb on - strand at 4142.910 kb on - strand at 4143.099 kb on + strand, within HP15_3914 at 4143.154 kb on - strand, within HP15_3914 at 4143.207 kb on - strand, within HP15_3914 at 4143.234 kb on + strand, within HP15_3914 at 4143.242 kb on + strand, within HP15_3914 at 4143.273 kb on + strand, within HP15_3914 at 4143.281 kb on - strand, within HP15_3914 at 4143.480 kb on - strand, within HP15_3914 at 4143.593 kb on - strand, within HP15_3914 at 4143.627 kb on + strand, within HP15_3914 at 4143.868 kb on + strand at 4143.868 kb on + strand at 4143.876 kb on - strand at 4143.876 kb on - strand at 4143.989 kb on - strand at 4144.025 kb on + strand at 4144.089 kb on - strand at 4144.197 kb on + strand, within HP15_3915 at 4144.231 kb on - strand, within HP15_3915 at 4144.238 kb on - strand, within HP15_3915 at 4144.240 kb on + strand, within HP15_3915 at 4144.248 kb on - strand, within HP15_3915 at 4144.248 kb on - strand, within HP15_3915 at 4144.281 kb on + strand, within HP15_3915 at 4144.364 kb on + strand, within HP15_3915 at 4144.504 kb on - strand, within HP15_3915 at 4144.538 kb on + strand, within HP15_3915 at 4144.565 kb on + strand, within HP15_3915
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 4,142,364 - HP15_3913 0.62 +0.3 4,142,387 - HP15_3913 0.64 -1.0 4,142,478 - HP15_3913 0.70 -2.5 4,142,489 + HP15_3913 0.71 +0.0 4,142,497 - HP15_3913 0.72 -0.5 4,142,503 - HP15_3913 0.72 +2.0 4,142,614 + HP15_3913 0.80 +1.4 4,142,616 + HP15_3913 0.80 -0.5 4,142,817 - -0.7 4,142,818 + +1.3 4,142,831 - +0.1 4,142,843 + +2.3 4,142,888 + +1.6 4,142,910 - -1.8 4,142,910 - -0.0 4,143,099 + HP15_3914 0.14 +1.4 4,143,154 - HP15_3914 0.21 +2.2 4,143,207 - HP15_3914 0.27 +0.9 4,143,234 + HP15_3914 0.30 +0.7 4,143,242 + HP15_3914 0.31 +1.7 4,143,273 + HP15_3914 0.34 -0.7 4,143,281 - HP15_3914 0.35 +2.2 4,143,480 - HP15_3914 0.57 -0.8 4,143,593 - HP15_3914 0.70 +1.7 4,143,627 + HP15_3914 0.74 +1.7 4,143,868 + +0.3 4,143,868 + -0.1 4,143,876 - +0.2 4,143,876 - -1.6 4,143,989 - -1.0 4,144,025 + +1.0 4,144,089 - +1.5 4,144,197 + HP15_3915 0.14 +1.1 4,144,231 - HP15_3915 0.16 +1.5 4,144,238 - HP15_3915 0.17 -0.6 4,144,240 + HP15_3915 0.17 -1.0 4,144,248 - HP15_3915 0.17 -1.3 4,144,248 - HP15_3915 0.17 -0.3 4,144,281 + HP15_3915 0.19 +0.8 4,144,364 + HP15_3915 0.25 +0.1 4,144,504 - HP15_3915 0.33 -0.4 4,144,538 + HP15_3915 0.35 +1.8 4,144,565 + HP15_3915 0.37 +0.1
Or see this region's nucleotide sequence