Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3371 and HP15_3372 are separated by 50 nucleotides HP15_3372 and HP15_3373 are separated by 170 nucleotides HP15_3373 and HP15_3374 are separated by 239 nucleotides HP15_3374 and HP15_3375 are separated by 17 nucleotides
HP15_3371: HP15_3371 - dienelactone hydrolase family protein, at 3,538,162 to 3,538,965
_3371
HP15_3372: HP15_3372 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,539,016 to 3,539,711
_3372
HP15_3373: HP15_3373 - cold shock, CspA, at 3,539,882 to 3,540,088
_3373
HP15_3374: HP15_3374 - protein CrcB-like protein, at 3,540,328 to 3,540,708
_3374
HP15_3375: HP15_3375 - acyl-coenzyme A dehydrogenase, at 3,540,726 to 3,543,176
_3375
Position (kb)
3539
3540
3541 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3538.960 kb on + strand at 3538.968 kb on - strand at 3538.972 kb on + strand at 3539.027 kb on + strand at 3539.027 kb on + strand at 3539.035 kb on - strand at 3539.035 kb on - strand at 3539.074 kb on + strand at 3539.119 kb on + strand, within HP15_3372 at 3539.127 kb on - strand, within HP15_3372 at 3539.134 kb on - strand, within HP15_3372 at 3539.317 kb on + strand, within HP15_3372 at 3539.327 kb on + strand, within HP15_3372 at 3539.383 kb on + strand, within HP15_3372 at 3539.438 kb on + strand, within HP15_3372 at 3539.580 kb on + strand, within HP15_3372 at 3539.674 kb on - strand at 3539.674 kb on - strand at 3539.692 kb on + strand at 3539.692 kb on + strand at 3539.692 kb on + strand at 3539.918 kb on - strand, within HP15_3373 at 3540.146 kb on + strand at 3540.197 kb on + strand at 3540.375 kb on + strand, within HP15_3374 at 3540.402 kb on - strand, within HP15_3374 at 3540.575 kb on + strand, within HP15_3374 at 3540.703 kb on + strand at 3540.708 kb on + strand at 3540.867 kb on + strand at 3540.885 kb on - strand at 3540.969 kb on + strand at 3540.969 kb on + strand at 3540.977 kb on - strand, within HP15_3375
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 3,538,960 + -0.1 3,538,968 - +0.8 3,538,972 + +0.7 3,539,027 + -0.5 3,539,027 + +0.2 3,539,035 - -0.8 3,539,035 - +1.7 3,539,074 + +2.4 3,539,119 + HP15_3372 0.15 +0.2 3,539,127 - HP15_3372 0.16 +0.6 3,539,134 - HP15_3372 0.17 +2.1 3,539,317 + HP15_3372 0.43 -0.1 3,539,327 + HP15_3372 0.45 -0.0 3,539,383 + HP15_3372 0.53 -0.0 3,539,438 + HP15_3372 0.61 +2.6 3,539,580 + HP15_3372 0.81 -2.1 3,539,674 - +0.0 3,539,674 - +0.4 3,539,692 + +1.5 3,539,692 + +2.4 3,539,692 + +0.2 3,539,918 - HP15_3373 0.17 -1.3 3,540,146 + -0.1 3,540,197 + -0.6 3,540,375 + HP15_3374 0.12 -0.7 3,540,402 - HP15_3374 0.19 -2.3 3,540,575 + HP15_3374 0.65 +2.5 3,540,703 + -1.2 3,540,708 + -1.0 3,540,867 + -1.0 3,540,885 - +0.1 3,540,969 + +2.4 3,540,969 + +2.0 3,540,977 - HP15_3375 0.10 +1.9
Or see this region's nucleotide sequence