Strain Fitness in Marinobacter adhaerens HP15 around HP15_3373

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3371 and HP15_3372 are separated by 50 nucleotidesHP15_3372 and HP15_3373 are separated by 170 nucleotidesHP15_3373 and HP15_3374 are separated by 239 nucleotidesHP15_3374 and HP15_3375 are separated by 17 nucleotides HP15_3371: HP15_3371 - dienelactone hydrolase family protein, at 3,538,162 to 3,538,965 _3371 HP15_3372: HP15_3372 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,539,016 to 3,539,711 _3372 HP15_3373: HP15_3373 - cold shock, CspA, at 3,539,882 to 3,540,088 _3373 HP15_3374: HP15_3374 - protein CrcB-like protein, at 3,540,328 to 3,540,708 _3374 HP15_3375: HP15_3375 - acyl-coenzyme A dehydrogenase, at 3,540,726 to 3,543,176 _3375 Position (kb) 3539 3540 3541Strain fitness (log2 ratio) -2 -1 0 1 2at 3538.960 kb on + strandat 3538.968 kb on - strandat 3538.972 kb on + strandat 3539.027 kb on + strandat 3539.027 kb on + strandat 3539.035 kb on - strandat 3539.035 kb on - strandat 3539.074 kb on + strandat 3539.119 kb on + strand, within HP15_3372at 3539.127 kb on - strand, within HP15_3372at 3539.134 kb on - strand, within HP15_3372at 3539.317 kb on + strand, within HP15_3372at 3539.327 kb on + strand, within HP15_3372at 3539.383 kb on + strand, within HP15_3372at 3539.438 kb on + strand, within HP15_3372at 3539.580 kb on + strand, within HP15_3372at 3539.674 kb on - strandat 3539.674 kb on - strandat 3539.692 kb on + strandat 3539.692 kb on + strandat 3539.692 kb on + strandat 3539.918 kb on - strand, within HP15_3373at 3540.146 kb on + strandat 3540.197 kb on + strandat 3540.375 kb on + strand, within HP15_3374at 3540.402 kb on - strand, within HP15_3374at 3540.575 kb on + strand, within HP15_3374at 3540.703 kb on + strandat 3540.708 kb on + strandat 3540.867 kb on + strandat 3540.885 kb on - strandat 3540.969 kb on + strandat 3540.969 kb on + strandat 3540.977 kb on - strand, within HP15_3375

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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3,538,960 + -0.1
3,538,968 - +0.8
3,538,972 + +0.7
3,539,027 + -0.5
3,539,027 + +0.2
3,539,035 - -0.8
3,539,035 - +1.7
3,539,074 + +2.4
3,539,119 + HP15_3372 0.15 +0.2
3,539,127 - HP15_3372 0.16 +0.6
3,539,134 - HP15_3372 0.17 +2.1
3,539,317 + HP15_3372 0.43 -0.1
3,539,327 + HP15_3372 0.45 -0.0
3,539,383 + HP15_3372 0.53 -0.0
3,539,438 + HP15_3372 0.61 +2.6
3,539,580 + HP15_3372 0.81 -2.1
3,539,674 - +0.0
3,539,674 - +0.4
3,539,692 + +1.5
3,539,692 + +2.4
3,539,692 + +0.2
3,539,918 - HP15_3373 0.17 -1.3
3,540,146 + -0.1
3,540,197 + -0.6
3,540,375 + HP15_3374 0.12 -0.7
3,540,402 - HP15_3374 0.19 -2.3
3,540,575 + HP15_3374 0.65 +2.5
3,540,703 + -1.2
3,540,708 + -1.0
3,540,867 + -1.0
3,540,885 - +0.1
3,540,969 + +2.4
3,540,969 + +2.0
3,540,977 - HP15_3375 0.10 +1.9

Or see this region's nucleotide sequence