Strain Fitness in Marinobacter adhaerens HP15 around HP15_3332

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3331 and HP15_3332 are separated by 258 nucleotidesHP15_3332 and HP15_3333 are separated by 60 nucleotides HP15_3331: HP15_3331 - oxidoreductase, GMC family, at 3,491,110 to 3,492,699 _3331 HP15_3332: HP15_3332 - phosphopantetheine adenylyltransferase, at 3,492,958 to 3,493,434 _3332 HP15_3333: HP15_3333 - membrane protein YdgA-like protein, at 3,493,495 to 3,494,784 _3333 Position (kb) 3492 3493 3494Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3492.142 kb on + strand, within HP15_3331at 3492.183 kb on + strand, within HP15_3331at 3492.214 kb on - strand, within HP15_3331at 3492.234 kb on - strand, within HP15_3331at 3492.239 kb on - strand, within HP15_3331at 3492.298 kb on + strand, within HP15_3331at 3492.303 kb on + strand, within HP15_3331at 3492.306 kb on - strand, within HP15_3331at 3492.311 kb on - strand, within HP15_3331at 3492.327 kb on + strand, within HP15_3331at 3492.346 kb on + strand, within HP15_3331at 3492.354 kb on - strand, within HP15_3331at 3492.531 kb on - strand, within HP15_3331at 3492.562 kb on + strandat 3492.578 kb on - strandat 3492.615 kb on + strandat 3492.626 kb on + strandat 3492.653 kb on - strandat 3492.681 kb on + strandat 3492.693 kb on + strandat 3492.701 kb on - strandat 3493.493 kb on + strandat 3493.542 kb on - strandat 3493.591 kb on - strandat 3493.773 kb on + strand, within HP15_3333at 3493.797 kb on + strand, within HP15_3333at 3493.873 kb on - strand, within HP15_3333at 3493.893 kb on + strand, within HP15_3333at 3493.959 kb on - strand, within HP15_3333at 3494.003 kb on + strand, within HP15_3333at 3494.003 kb on + strand, within HP15_3333at 3494.003 kb on + strand, within HP15_3333at 3494.038 kb on + strand, within HP15_3333at 3494.064 kb on - strand, within HP15_3333at 3494.082 kb on + strand, within HP15_3333at 3494.177 kb on - strand, within HP15_3333at 3494.180 kb on + strand, within HP15_3333at 3494.188 kb on - strand, within HP15_3333at 3494.228 kb on + strand, within HP15_3333at 3494.257 kb on + strand, within HP15_3333at 3494.262 kb on + strand, within HP15_3333at 3494.262 kb on + strand, within HP15_3333at 3494.262 kb on + strand, within HP15_3333at 3494.270 kb on - strand, within HP15_3333at 3494.270 kb on - strand, within HP15_3333at 3494.270 kb on - strand, within HP15_3333

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
remove
3,492,142 + HP15_3331 0.65 -0.1
3,492,183 + HP15_3331 0.67 +1.4
3,492,214 - HP15_3331 0.69 +4.3
3,492,234 - HP15_3331 0.71 -2.6
3,492,239 - HP15_3331 0.71 +2.5
3,492,298 + HP15_3331 0.75 -0.8
3,492,303 + HP15_3331 0.75 +0.7
3,492,306 - HP15_3331 0.75 +0.9
3,492,311 - HP15_3331 0.76 +1.9
3,492,327 + HP15_3331 0.77 +1.5
3,492,346 + HP15_3331 0.78 +0.3
3,492,354 - HP15_3331 0.78 +0.7
3,492,531 - HP15_3331 0.89 -0.2
3,492,562 + -0.2
3,492,578 - +0.5
3,492,615 + +1.2
3,492,626 + +1.2
3,492,653 - +0.5
3,492,681 + -1.0
3,492,693 + +1.9
3,492,701 - -0.4
3,493,493 + -1.7
3,493,542 - +2.6
3,493,591 - +0.4
3,493,773 + HP15_3333 0.22 -0.4
3,493,797 + HP15_3333 0.23 +2.2
3,493,873 - HP15_3333 0.29 -1.9
3,493,893 + HP15_3333 0.31 +0.6
3,493,959 - HP15_3333 0.36 +2.1
3,494,003 + HP15_3333 0.39 +0.1
3,494,003 + HP15_3333 0.39 -0.2
3,494,003 + HP15_3333 0.39 +0.3
3,494,038 + HP15_3333 0.42 -0.2
3,494,064 - HP15_3333 0.44 -0.2
3,494,082 + HP15_3333 0.46 +1.6
3,494,177 - HP15_3333 0.53 +0.3
3,494,180 + HP15_3333 0.53 +1.1
3,494,188 - HP15_3333 0.54 +1.3
3,494,228 + HP15_3333 0.57 -0.5
3,494,257 + HP15_3333 0.59 +1.8
3,494,262 + HP15_3333 0.59 +2.3
3,494,262 + HP15_3333 0.59 -0.5
3,494,262 + HP15_3333 0.59 +0.0
3,494,270 - HP15_3333 0.60 +0.2
3,494,270 - HP15_3333 0.60 -0.7
3,494,270 - HP15_3333 0.60 +2.6

Or see this region's nucleotide sequence