Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3331 and HP15_3332 are separated by 258 nucleotides HP15_3332 and HP15_3333 are separated by 60 nucleotides
HP15_3331: HP15_3331 - oxidoreductase, GMC family, at 3,491,110 to 3,492,699
_3331
HP15_3332: HP15_3332 - phosphopantetheine adenylyltransferase, at 3,492,958 to 3,493,434
_3332
HP15_3333: HP15_3333 - membrane protein YdgA-like protein, at 3,493,495 to 3,494,784
_3333
Position (kb)
3492
3493
3494 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3492.142 kb on + strand, within HP15_3331 at 3492.183 kb on + strand, within HP15_3331 at 3492.214 kb on - strand, within HP15_3331 at 3492.234 kb on - strand, within HP15_3331 at 3492.239 kb on - strand, within HP15_3331 at 3492.298 kb on + strand, within HP15_3331 at 3492.303 kb on + strand, within HP15_3331 at 3492.306 kb on - strand, within HP15_3331 at 3492.311 kb on - strand, within HP15_3331 at 3492.327 kb on + strand, within HP15_3331 at 3492.346 kb on + strand, within HP15_3331 at 3492.354 kb on - strand, within HP15_3331 at 3492.531 kb on - strand, within HP15_3331 at 3492.562 kb on + strand at 3492.578 kb on - strand at 3492.615 kb on + strand at 3492.626 kb on + strand at 3492.653 kb on - strand at 3492.681 kb on + strand at 3492.693 kb on + strand at 3492.701 kb on - strand at 3493.493 kb on + strand at 3493.542 kb on - strand at 3493.591 kb on - strand at 3493.773 kb on + strand, within HP15_3333 at 3493.797 kb on + strand, within HP15_3333 at 3493.873 kb on - strand, within HP15_3333 at 3493.893 kb on + strand, within HP15_3333 at 3493.959 kb on - strand, within HP15_3333 at 3494.003 kb on + strand, within HP15_3333 at 3494.003 kb on + strand, within HP15_3333 at 3494.003 kb on + strand, within HP15_3333 at 3494.038 kb on + strand, within HP15_3333 at 3494.064 kb on - strand, within HP15_3333 at 3494.082 kb on + strand, within HP15_3333 at 3494.177 kb on - strand, within HP15_3333 at 3494.180 kb on + strand, within HP15_3333 at 3494.188 kb on - strand, within HP15_3333 at 3494.228 kb on + strand, within HP15_3333 at 3494.257 kb on + strand, within HP15_3333 at 3494.262 kb on + strand, within HP15_3333 at 3494.262 kb on + strand, within HP15_3333 at 3494.262 kb on + strand, within HP15_3333 at 3494.270 kb on - strand, within HP15_3333 at 3494.270 kb on - strand, within HP15_3333 at 3494.270 kb on - strand, within HP15_3333
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 3,492,142 + HP15_3331 0.65 -0.1 3,492,183 + HP15_3331 0.67 +1.4 3,492,214 - HP15_3331 0.69 +4.3 3,492,234 - HP15_3331 0.71 -2.6 3,492,239 - HP15_3331 0.71 +2.5 3,492,298 + HP15_3331 0.75 -0.8 3,492,303 + HP15_3331 0.75 +0.7 3,492,306 - HP15_3331 0.75 +0.9 3,492,311 - HP15_3331 0.76 +1.9 3,492,327 + HP15_3331 0.77 +1.5 3,492,346 + HP15_3331 0.78 +0.3 3,492,354 - HP15_3331 0.78 +0.7 3,492,531 - HP15_3331 0.89 -0.2 3,492,562 + -0.2 3,492,578 - +0.5 3,492,615 + +1.2 3,492,626 + +1.2 3,492,653 - +0.5 3,492,681 + -1.0 3,492,693 + +1.9 3,492,701 - -0.4 3,493,493 + -1.7 3,493,542 - +2.6 3,493,591 - +0.4 3,493,773 + HP15_3333 0.22 -0.4 3,493,797 + HP15_3333 0.23 +2.2 3,493,873 - HP15_3333 0.29 -1.9 3,493,893 + HP15_3333 0.31 +0.6 3,493,959 - HP15_3333 0.36 +2.1 3,494,003 + HP15_3333 0.39 +0.1 3,494,003 + HP15_3333 0.39 -0.2 3,494,003 + HP15_3333 0.39 +0.3 3,494,038 + HP15_3333 0.42 -0.2 3,494,064 - HP15_3333 0.44 -0.2 3,494,082 + HP15_3333 0.46 +1.6 3,494,177 - HP15_3333 0.53 +0.3 3,494,180 + HP15_3333 0.53 +1.1 3,494,188 - HP15_3333 0.54 +1.3 3,494,228 + HP15_3333 0.57 -0.5 3,494,257 + HP15_3333 0.59 +1.8 3,494,262 + HP15_3333 0.59 +2.3 3,494,262 + HP15_3333 0.59 -0.5 3,494,262 + HP15_3333 0.59 +0.0 3,494,270 - HP15_3333 0.60 +0.2 3,494,270 - HP15_3333 0.60 -0.7 3,494,270 - HP15_3333 0.60 +2.6
Or see this region's nucleotide sequence