Strain Fitness in Marinobacter adhaerens HP15 around HP15_3273

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3272 and HP15_3273 are separated by 407 nucleotidesHP15_3273 and HP15_3274 are separated by 90 nucleotidesHP15_3274 and HP15_3275 are separated by 66 nucleotides HP15_3272: HP15_3272 - inositol-1(or 4)-monophosphatase, at 3,430,905 to 3,431,729 _3272 HP15_3273: HP15_3273 - nucleoid occlusion protein, at 3,432,137 to 3,432,724 _3273 HP15_3274: HP15_3274 - thiazole synthase, at 3,432,815 to 3,433,624 _3274 HP15_3275: HP15_3275 - ThiS, thiamine-biosynthesis, at 3,433,691 to 3,433,891 _3275 Position (kb) 3432 3433Strain fitness (log2 ratio) -2 -1 0 1 2at 3431.331 kb on - strand, within HP15_3272at 3431.482 kb on + strand, within HP15_3272at 3431.501 kb on + strand, within HP15_3272at 3431.556 kb on - strand, within HP15_3272at 3431.695 kb on + strandat 3431.703 kb on - strandat 3431.720 kb on - strandat 3431.736 kb on - strandat 3431.792 kb on + strandat 3432.284 kb on + strand, within HP15_3273at 3432.321 kb on - strand, within HP15_3273at 3432.361 kb on - strand, within HP15_3273at 3432.414 kb on + strand, within HP15_3273at 3432.424 kb on + strand, within HP15_3273at 3432.424 kb on + strand, within HP15_3273at 3432.424 kb on + strand, within HP15_3273at 3432.432 kb on - strand, within HP15_3273at 3432.513 kb on - strand, within HP15_3273at 3432.533 kb on - strand, within HP15_3273at 3432.553 kb on - strand, within HP15_3273at 3432.604 kb on + strand, within HP15_3273at 3432.755 kb on + strandat 3432.784 kb on + strandat 3432.784 kb on + strandat 3433.620 kb on + strandat 3433.628 kb on - strandat 3433.628 kb on - strandat 3433.661 kb on - strandat 3433.683 kb on - strandat 3433.687 kb on + strandat 3433.689 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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3,431,331 - HP15_3272 0.52 +2.3
3,431,482 + HP15_3272 0.70 +0.7
3,431,501 + HP15_3272 0.72 -1.0
3,431,556 - HP15_3272 0.79 +1.2
3,431,695 + +2.5
3,431,703 - +1.5
3,431,720 - +0.4
3,431,736 - -1.7
3,431,792 + +1.6
3,432,284 + HP15_3273 0.25 +0.0
3,432,321 - HP15_3273 0.31 +2.1
3,432,361 - HP15_3273 0.38 -1.3
3,432,414 + HP15_3273 0.47 -1.9
3,432,424 + HP15_3273 0.49 +1.9
3,432,424 + HP15_3273 0.49 +2.3
3,432,424 + HP15_3273 0.49 +1.6
3,432,432 - HP15_3273 0.50 +0.0
3,432,513 - HP15_3273 0.64 -0.1
3,432,533 - HP15_3273 0.67 +2.3
3,432,553 - HP15_3273 0.71 +1.5
3,432,604 + HP15_3273 0.79 -0.1
3,432,755 + -0.1
3,432,784 + -0.6
3,432,784 + +0.5
3,433,620 + -0.4
3,433,628 - +0.1
3,433,628 - +1.2
3,433,661 - +1.7
3,433,683 - +0.3
3,433,687 + +0.0
3,433,689 - -0.2

Or see this region's nucleotide sequence