Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3061 and HP15_3062 are separated by 86 nucleotides HP15_3062 and HP15_3063 are separated by 192 nucleotides
HP15_3061: HP15_3061 - conserved hypothetical protein, secreted, at 3,211,487 to 3,213,367
_3061
HP15_3062: HP15_3062 - lipoprotein, at 3,213,454 to 3,214,215
_3062
HP15_3063: HP15_3063 - polynucleotide phosphorylase/polyadenylase, at 3,214,408 to 3,216,591
_3063
Position (kb)
3213
3214
3215 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3212.464 kb on - strand, within HP15_3061 at 3212.596 kb on - strand, within HP15_3061 at 3212.630 kb on + strand, within HP15_3061 at 3212.633 kb on - strand, within HP15_3061 at 3212.671 kb on + strand, within HP15_3061 at 3212.713 kb on - strand, within HP15_3061 at 3212.959 kb on + strand, within HP15_3061 at 3213.024 kb on + strand, within HP15_3061 at 3213.118 kb on + strand, within HP15_3061 at 3213.127 kb on + strand, within HP15_3061 at 3213.140 kb on - strand, within HP15_3061 at 3213.238 kb on + strand at 3213.244 kb on + strand at 3213.506 kb on - strand at 3213.722 kb on - strand, within HP15_3062 at 3213.722 kb on - strand, within HP15_3062 at 3213.832 kb on + strand, within HP15_3062 at 3213.867 kb on + strand, within HP15_3062 at 3213.881 kb on + strand, within HP15_3062 at 3213.881 kb on + strand, within HP15_3062 at 3213.881 kb on + strand, within HP15_3062 at 3213.889 kb on - strand, within HP15_3062 at 3213.889 kb on - strand, within HP15_3062 at 3213.889 kb on - strand, within HP15_3062 at 3213.889 kb on - strand, within HP15_3062 at 3214.033 kb on + strand, within HP15_3062 at 3214.098 kb on + strand, within HP15_3062 at 3214.106 kb on - strand, within HP15_3062 at 3214.178 kb on + strand at 3214.207 kb on + strand at 3214.217 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 3,212,464 - HP15_3061 0.52 +0.6 3,212,596 - HP15_3061 0.59 +0.9 3,212,630 + HP15_3061 0.61 +0.1 3,212,633 - HP15_3061 0.61 -1.4 3,212,671 + HP15_3061 0.63 +1.9 3,212,713 - HP15_3061 0.65 +1.9 3,212,959 + HP15_3061 0.78 +2.5 3,213,024 + HP15_3061 0.82 +2.0 3,213,118 + HP15_3061 0.87 +1.8 3,213,127 + HP15_3061 0.87 -0.5 3,213,140 - HP15_3061 0.88 -1.2 3,213,238 + -1.0 3,213,244 + +1.5 3,213,506 - +0.8 3,213,722 - HP15_3062 0.35 +2.1 3,213,722 - HP15_3062 0.35 +2.6 3,213,832 + HP15_3062 0.50 +1.0 3,213,867 + HP15_3062 0.54 -2.7 3,213,881 + HP15_3062 0.56 +0.1 3,213,881 + HP15_3062 0.56 -0.3 3,213,881 + HP15_3062 0.56 +2.1 3,213,889 - HP15_3062 0.57 +0.3 3,213,889 - HP15_3062 0.57 +0.0 3,213,889 - HP15_3062 0.57 -1.1 3,213,889 - HP15_3062 0.57 +1.5 3,214,033 + HP15_3062 0.76 +1.7 3,214,098 + HP15_3062 0.85 +0.6 3,214,106 - HP15_3062 0.86 -0.5 3,214,178 + +0.3 3,214,207 + -0.4 3,214,217 + -0.5
Or see this region's nucleotide sequence