Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2895 and HP15_2896 overlap by 4 nucleotides HP15_2896 and HP15_2897 are separated by 103 nucleotides
HP15_2895: HP15_2895 - integral membrane protein, at 3,030,485 to 3,031,543
_2895
HP15_2896: HP15_2896 - glycosyltransferase, at 3,031,540 to 3,033,783
_2896
HP15_2897: HP15_2897 - uncharacterized conserved protein UCP037004, at 3,033,887 to 3,034,834
_2897
Position (kb)
3031
3032
3033
3034 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3030.580 kb on + strand at 3030.699 kb on + strand, within HP15_2895 at 3030.733 kb on - strand, within HP15_2895 at 3030.829 kb on + strand, within HP15_2895 at 3030.954 kb on - strand, within HP15_2895 at 3031.273 kb on + strand, within HP15_2895 at 3031.284 kb on + strand, within HP15_2895 at 3031.292 kb on - strand, within HP15_2895 at 3031.292 kb on - strand, within HP15_2895 at 3031.322 kb on - strand, within HP15_2895 at 3031.774 kb on - strand, within HP15_2896 at 3031.845 kb on - strand, within HP15_2896 at 3031.957 kb on + strand, within HP15_2896 at 3032.059 kb on + strand, within HP15_2896 at 3032.067 kb on - strand, within HP15_2896 at 3032.086 kb on - strand, within HP15_2896 at 3032.211 kb on - strand, within HP15_2896 at 3032.307 kb on - strand, within HP15_2896 at 3032.381 kb on + strand, within HP15_2896 at 3032.389 kb on - strand, within HP15_2896 at 3032.456 kb on - strand, within HP15_2896 at 3032.456 kb on - strand, within HP15_2896 at 3032.456 kb on - strand, within HP15_2896 at 3032.557 kb on + strand, within HP15_2896 at 3032.558 kb on + strand, within HP15_2896 at 3032.916 kb on - strand, within HP15_2896 at 3032.943 kb on - strand, within HP15_2896 at 3033.005 kb on + strand, within HP15_2896 at 3033.092 kb on + strand, within HP15_2896 at 3033.151 kb on + strand, within HP15_2896 at 3033.151 kb on + strand, within HP15_2896 at 3033.444 kb on - strand, within HP15_2896 at 3033.686 kb on + strand at 3033.686 kb on + strand at 3033.701 kb on + strand at 3033.718 kb on + strand at 3033.725 kb on + strand at 3034.074 kb on + strand, within HP15_2897 at 3034.096 kb on + strand, within HP15_2897 at 3034.117 kb on + strand at 3034.127 kb on + strand, within HP15_2897 at 3034.147 kb on + strand, within HP15_2897 at 3034.184 kb on - strand, within HP15_2897 at 3034.296 kb on - strand, within HP15_2897 at 3034.296 kb on - strand, within HP15_2897 at 3034.441 kb on - strand, within HP15_2897 at 3034.503 kb on - strand, within HP15_2897 at 3034.514 kb on + strand, within HP15_2897 at 3034.599 kb on + strand, within HP15_2897 at 3034.643 kb on - strand, within HP15_2897 at 3034.670 kb on + strand, within HP15_2897
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 3,030,580 + -0.4 3,030,699 + HP15_2895 0.20 -0.1 3,030,733 - HP15_2895 0.23 -1.2 3,030,829 + HP15_2895 0.32 -0.2 3,030,954 - HP15_2895 0.44 -2.2 3,031,273 + HP15_2895 0.74 -0.8 3,031,284 + HP15_2895 0.75 +0.1 3,031,292 - HP15_2895 0.76 +0.0 3,031,292 - HP15_2895 0.76 +0.3 3,031,322 - HP15_2895 0.79 -1.1 3,031,774 - HP15_2896 0.10 +1.7 3,031,845 - HP15_2896 0.14 +0.2 3,031,957 + HP15_2896 0.19 +0.4 3,032,059 + HP15_2896 0.23 +1.5 3,032,067 - HP15_2896 0.23 -0.0 3,032,086 - HP15_2896 0.24 -1.5 3,032,211 - HP15_2896 0.30 -0.8 3,032,307 - HP15_2896 0.34 -1.3 3,032,381 + HP15_2896 0.37 +1.4 3,032,389 - HP15_2896 0.38 +2.6 3,032,456 - HP15_2896 0.41 +0.1 3,032,456 - HP15_2896 0.41 -1.3 3,032,456 - HP15_2896 0.41 +1.4 3,032,557 + HP15_2896 0.45 -2.4 3,032,558 + HP15_2896 0.45 +1.7 3,032,916 - HP15_2896 0.61 +1.8 3,032,943 - HP15_2896 0.63 +1.3 3,033,005 + HP15_2896 0.65 +0.6 3,033,092 + HP15_2896 0.69 +2.1 3,033,151 + HP15_2896 0.72 +1.5 3,033,151 + HP15_2896 0.72 +1.4 3,033,444 - HP15_2896 0.85 -1.1 3,033,686 + +2.3 3,033,686 + +2.1 3,033,701 + -0.5 3,033,718 + -1.3 3,033,725 + +2.3 3,034,074 + HP15_2897 0.20 -0.5 3,034,096 + HP15_2897 0.22 +1.8 3,034,117 + +1.1 3,034,127 + HP15_2897 0.25 -0.4 3,034,147 + HP15_2897 0.27 -2.1 3,034,184 - HP15_2897 0.31 -0.1 3,034,296 - HP15_2897 0.43 -0.6 3,034,296 - HP15_2897 0.43 -1.0 3,034,441 - HP15_2897 0.58 +1.1 3,034,503 - HP15_2897 0.65 +1.2 3,034,514 + HP15_2897 0.66 +0.0 3,034,599 + HP15_2897 0.75 +2.0 3,034,643 - HP15_2897 0.80 -0.6 3,034,670 + HP15_2897 0.83 -0.6
Or see this region's nucleotide sequence