Strain Fitness in Marinobacter adhaerens HP15 around HP15_2896

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2895 and HP15_2896 overlap by 4 nucleotidesHP15_2896 and HP15_2897 are separated by 103 nucleotides HP15_2895: HP15_2895 - integral membrane protein, at 3,030,485 to 3,031,543 _2895 HP15_2896: HP15_2896 - glycosyltransferase, at 3,031,540 to 3,033,783 _2896 HP15_2897: HP15_2897 - uncharacterized conserved protein UCP037004, at 3,033,887 to 3,034,834 _2897 Position (kb) 3031 3032 3033 3034Strain fitness (log2 ratio) -2 -1 0 1 2at 3030.580 kb on + strandat 3030.699 kb on + strand, within HP15_2895at 3030.733 kb on - strand, within HP15_2895at 3030.829 kb on + strand, within HP15_2895at 3030.954 kb on - strand, within HP15_2895at 3031.273 kb on + strand, within HP15_2895at 3031.284 kb on + strand, within HP15_2895at 3031.292 kb on - strand, within HP15_2895at 3031.292 kb on - strand, within HP15_2895at 3031.322 kb on - strand, within HP15_2895at 3031.774 kb on - strand, within HP15_2896at 3031.845 kb on - strand, within HP15_2896at 3031.957 kb on + strand, within HP15_2896at 3032.059 kb on + strand, within HP15_2896at 3032.067 kb on - strand, within HP15_2896at 3032.086 kb on - strand, within HP15_2896at 3032.211 kb on - strand, within HP15_2896at 3032.307 kb on - strand, within HP15_2896at 3032.381 kb on + strand, within HP15_2896at 3032.389 kb on - strand, within HP15_2896at 3032.456 kb on - strand, within HP15_2896at 3032.456 kb on - strand, within HP15_2896at 3032.456 kb on - strand, within HP15_2896at 3032.557 kb on + strand, within HP15_2896at 3032.558 kb on + strand, within HP15_2896at 3032.916 kb on - strand, within HP15_2896at 3032.943 kb on - strand, within HP15_2896at 3033.005 kb on + strand, within HP15_2896at 3033.092 kb on + strand, within HP15_2896at 3033.151 kb on + strand, within HP15_2896at 3033.151 kb on + strand, within HP15_2896at 3033.444 kb on - strand, within HP15_2896at 3033.686 kb on + strandat 3033.686 kb on + strandat 3033.701 kb on + strandat 3033.718 kb on + strandat 3033.725 kb on + strandat 3034.074 kb on + strand, within HP15_2897at 3034.096 kb on + strand, within HP15_2897at 3034.117 kb on + strandat 3034.127 kb on + strand, within HP15_2897at 3034.147 kb on + strand, within HP15_2897at 3034.184 kb on - strand, within HP15_2897at 3034.296 kb on - strand, within HP15_2897at 3034.296 kb on - strand, within HP15_2897at 3034.441 kb on - strand, within HP15_2897at 3034.503 kb on - strand, within HP15_2897at 3034.514 kb on + strand, within HP15_2897at 3034.599 kb on + strand, within HP15_2897at 3034.643 kb on - strand, within HP15_2897at 3034.670 kb on + strand, within HP15_2897

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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3,030,580 + -0.4
3,030,699 + HP15_2895 0.20 -0.1
3,030,733 - HP15_2895 0.23 -1.2
3,030,829 + HP15_2895 0.32 -0.2
3,030,954 - HP15_2895 0.44 -2.2
3,031,273 + HP15_2895 0.74 -0.8
3,031,284 + HP15_2895 0.75 +0.1
3,031,292 - HP15_2895 0.76 +0.0
3,031,292 - HP15_2895 0.76 +0.3
3,031,322 - HP15_2895 0.79 -1.1
3,031,774 - HP15_2896 0.10 +1.7
3,031,845 - HP15_2896 0.14 +0.2
3,031,957 + HP15_2896 0.19 +0.4
3,032,059 + HP15_2896 0.23 +1.5
3,032,067 - HP15_2896 0.23 -0.0
3,032,086 - HP15_2896 0.24 -1.5
3,032,211 - HP15_2896 0.30 -0.8
3,032,307 - HP15_2896 0.34 -1.3
3,032,381 + HP15_2896 0.37 +1.4
3,032,389 - HP15_2896 0.38 +2.6
3,032,456 - HP15_2896 0.41 +0.1
3,032,456 - HP15_2896 0.41 -1.3
3,032,456 - HP15_2896 0.41 +1.4
3,032,557 + HP15_2896 0.45 -2.4
3,032,558 + HP15_2896 0.45 +1.7
3,032,916 - HP15_2896 0.61 +1.8
3,032,943 - HP15_2896 0.63 +1.3
3,033,005 + HP15_2896 0.65 +0.6
3,033,092 + HP15_2896 0.69 +2.1
3,033,151 + HP15_2896 0.72 +1.5
3,033,151 + HP15_2896 0.72 +1.4
3,033,444 - HP15_2896 0.85 -1.1
3,033,686 + +2.3
3,033,686 + +2.1
3,033,701 + -0.5
3,033,718 + -1.3
3,033,725 + +2.3
3,034,074 + HP15_2897 0.20 -0.5
3,034,096 + HP15_2897 0.22 +1.8
3,034,117 + +1.1
3,034,127 + HP15_2897 0.25 -0.4
3,034,147 + HP15_2897 0.27 -2.1
3,034,184 - HP15_2897 0.31 -0.1
3,034,296 - HP15_2897 0.43 -0.6
3,034,296 - HP15_2897 0.43 -1.0
3,034,441 - HP15_2897 0.58 +1.1
3,034,503 - HP15_2897 0.65 +1.2
3,034,514 + HP15_2897 0.66 +0.0
3,034,599 + HP15_2897 0.75 +2.0
3,034,643 - HP15_2897 0.80 -0.6
3,034,670 + HP15_2897 0.83 -0.6

Or see this region's nucleotide sequence