Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_285 and HP15_286 are separated by 243 nucleotides HP15_286 and HP15_287 are separated by 22 nucleotides HP15_287 and HP15_288 are separated by 61 nucleotides HP15_288 and HP15_289 are separated by 224 nucleotides
HP15_285: HP15_285 - conserved hypothetical protein, at 275,412 to 277,376
_285
HP15_286: HP15_286 - protein of unknown function YGGT, at 277,620 to 278,204
_286
HP15_287: HP15_287 - pyrroline-5-carboxylate reductase, at 278,227 to 279,060
_287
HP15_288: HP15_288 - alanine racemase domain protein, at 279,122 to 279,742
_288
HP15_289: HP15_289 - twitching motility protein PilT, at 279,967 to 281,001
_289
Position (kb) 278
279
280 Strain fitness (log2 ratio) -2
-1
0
1
2 at 277.231 kb on - strand at 277.256 kb on + strand at 277.339 kb on + strand at 277.360 kb on + strand at 277.598 kb on - strand at 277.641 kb on + strand at 277.641 kb on + strand at 277.721 kb on + strand, within HP15_286 at 277.721 kb on + strand, within HP15_286 at 277.729 kb on - strand, within HP15_286 at 277.729 kb on - strand, within HP15_286 at 277.729 kb on - strand, within HP15_286 at 277.729 kb on - strand, within HP15_286 at 277.729 kb on - strand, within HP15_286 at 277.749 kb on + strand, within HP15_286 at 277.749 kb on - strand, within HP15_286 at 277.884 kb on - strand, within HP15_286 at 277.890 kb on + strand, within HP15_286 at 277.895 kb on + strand, within HP15_286 at 277.896 kb on - strand, within HP15_286 at 277.905 kb on + strand, within HP15_286 at 277.971 kb on + strand, within HP15_286 at 277.972 kb on - strand, within HP15_286 at 277.977 kb on + strand, within HP15_286 at 278.035 kb on - strand, within HP15_286 at 278.153 kb on + strand at 278.576 kb on + strand, within HP15_287 at 278.874 kb on + strand, within HP15_287 at 279.061 kb on + strand at 279.067 kb on + strand at 279.094 kb on + strand at 279.097 kb on - strand at 279.102 kb on - strand at 279.151 kb on + strand at 279.151 kb on + strand at 279.159 kb on - strand at 279.159 kb on - strand at 279.164 kb on - strand at 279.228 kb on + strand, within HP15_288 at 279.231 kb on - strand, within HP15_288 at 279.261 kb on - strand, within HP15_288 at 279.312 kb on + strand, within HP15_288 at 279.411 kb on - strand, within HP15_288 at 279.510 kb on + strand, within HP15_288 at 279.510 kb on + strand, within HP15_288 at 279.623 kb on + strand, within HP15_288 at 279.654 kb on - strand, within HP15_288 at 279.739 kb on + strand at 279.739 kb on + strand at 279.811 kb on + strand at 279.824 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 277,231 - +2.6 277,256 + +1.4 277,339 + +1.1 277,360 + -0.5 277,598 - -1.2 277,641 + -0.5 277,641 + -2.0 277,721 + HP15_286 0.17 -0.0 277,721 + HP15_286 0.17 -0.3 277,729 - HP15_286 0.19 -2.4 277,729 - HP15_286 0.19 +0.1 277,729 - HP15_286 0.19 +1.6 277,729 - HP15_286 0.19 +1.6 277,729 - HP15_286 0.19 +0.9 277,749 + HP15_286 0.22 -0.9 277,749 - HP15_286 0.22 -0.1 277,884 - HP15_286 0.45 +1.0 277,890 + HP15_286 0.46 +0.1 277,895 + HP15_286 0.47 -0.2 277,896 - HP15_286 0.47 -1.0 277,905 + HP15_286 0.49 +1.6 277,971 + HP15_286 0.60 +1.0 277,972 - HP15_286 0.60 -0.7 277,977 + HP15_286 0.61 +0.4 278,035 - HP15_286 0.71 +1.4 278,153 + +0.3 278,576 + HP15_287 0.42 +0.4 278,874 + HP15_287 0.78 -2.0 279,061 + -0.5 279,067 + +0.1 279,094 + -1.4 279,097 - +2.1 279,102 - -1.1 279,151 + +1.2 279,151 + +1.6 279,159 - -0.3 279,159 - -0.5 279,164 - +0.0 279,228 + HP15_288 0.17 -0.1 279,231 - HP15_288 0.18 +2.3 279,261 - HP15_288 0.22 +0.5 279,312 + HP15_288 0.31 +0.2 279,411 - HP15_288 0.47 +1.0 279,510 + HP15_288 0.62 -0.4 279,510 + HP15_288 0.62 +1.4 279,623 + HP15_288 0.81 +1.1 279,654 - HP15_288 0.86 +2.5 279,739 + +2.5 279,739 + -1.1 279,811 + -0.6 279,824 - -0.5
Or see this region's nucleotide sequence