Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2779 and HP15_2780 are separated by 97 nucleotides HP15_2780 and HP15_2781 are separated by 76 nucleotides HP15_2781 and HP15_2782 are separated by 15 nucleotides HP15_2782 and HP15_2783 overlap by 4 nucleotides
HP15_2779: HP15_2779 - GTP cyclohydrolase II, at 2,930,441 to 2,930,920
_2779
HP15_2780: HP15_2780 - monofunctional biosynthetic peptidoglycan transglycosylase, at 2,931,018 to 2,931,710
_2780
HP15_2781: HP15_2781 - hypothetical protein, at 2,931,787 to 2,931,900
_2781
HP15_2782: HP15_2782 - hypothetical protein, at 2,931,916 to 2,932,149
_2782
HP15_2783: HP15_2783 - polyhydroxyalkanoate depolymerase, intracellular, at 2,932,146 to 2,933,363
_2783
Position (kb)
2931
2932 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2930.791 kb on + strand, within HP15_2779 at 2930.799 kb on - strand, within HP15_2779 at 2930.836 kb on + strand, within HP15_2779 at 2930.844 kb on - strand, within HP15_2779 at 2930.892 kb on - strand at 2930.986 kb on + strand at 2931.055 kb on - strand at 2931.079 kb on + strand at 2931.081 kb on + strand at 2931.162 kb on - strand, within HP15_2780 at 2931.162 kb on - strand, within HP15_2780 at 2931.357 kb on + strand, within HP15_2780 at 2931.516 kb on + strand, within HP15_2780 at 2931.721 kb on - strand at 2931.785 kb on + strand at 2931.814 kb on - strand, within HP15_2781 at 2931.897 kb on + strand at 2931.910 kb on - strand at 2931.910 kb on - strand at 2931.951 kb on + strand, within HP15_2782 at 2931.990 kb on - strand, within HP15_2782 at 2932.120 kb on - strand, within HP15_2782 at 2932.144 kb on - strand at 2932.172 kb on - strand at 2932.174 kb on + strand at 2932.241 kb on - strand at 2932.304 kb on + strand, within HP15_2783 at 2932.345 kb on - strand, within HP15_2783 at 2932.373 kb on - strand, within HP15_2783 at 2932.387 kb on - strand, within HP15_2783 at 2932.398 kb on + strand at 2932.409 kb on + strand, within HP15_2783 at 2932.417 kb on - strand, within HP15_2783 at 2932.437 kb on - strand, within HP15_2783 at 2932.499 kb on + strand, within HP15_2783 at 2932.577 kb on - strand, within HP15_2783 at 2932.841 kb on + strand, within HP15_2783
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 2,930,791 + HP15_2779 0.73 +1.8 2,930,799 - HP15_2779 0.75 +2.0 2,930,836 + HP15_2779 0.82 -0.7 2,930,844 - HP15_2779 0.84 +2.8 2,930,892 - -0.2 2,930,986 + +0.1 2,931,055 - +2.0 2,931,079 + -1.0 2,931,081 + -0.3 2,931,162 - HP15_2780 0.21 +1.1 2,931,162 - HP15_2780 0.21 +0.5 2,931,357 + HP15_2780 0.49 +1.1 2,931,516 + HP15_2780 0.72 +2.1 2,931,721 - -1.9 2,931,785 + +2.0 2,931,814 - HP15_2781 0.24 -0.6 2,931,897 + -1.2 2,931,910 - -0.5 2,931,910 - -0.4 2,931,951 + HP15_2782 0.15 -0.2 2,931,990 - HP15_2782 0.32 -0.2 2,932,120 - HP15_2782 0.87 -0.5 2,932,144 - -1.1 2,932,172 - +0.2 2,932,174 + +0.1 2,932,241 - -1.1 2,932,304 + HP15_2783 0.13 -1.0 2,932,345 - HP15_2783 0.16 -1.8 2,932,373 - HP15_2783 0.19 +2.2 2,932,387 - HP15_2783 0.20 -2.6 2,932,398 + -0.9 2,932,409 + HP15_2783 0.22 -0.6 2,932,417 - HP15_2783 0.22 -1.0 2,932,437 - HP15_2783 0.24 +0.2 2,932,499 + HP15_2783 0.29 +2.4 2,932,577 - HP15_2783 0.35 +1.0 2,932,841 + HP15_2783 0.57 +0.2
Or see this region's nucleotide sequence