Strain Fitness in Marinobacter adhaerens HP15 around HP15_2757

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2756 and HP15_2757 are separated by 74 nucleotidesHP15_2757 and HP15_2758 are separated by 133 nucleotidesHP15_2758 and HP15_2759 are separated by 7 nucleotides HP15_2756: HP15_2756 - metallo-beta-lactamase superfamily protein, at 2,910,284 to 2,912,314 _2756 HP15_2757: HP15_2757 - conserved hypothetical protein, at 2,912,389 to 2,912,712 _2757 HP15_2758: HP15_2758 - conserved hypothetical protein, membrane, at 2,912,846 to 2,913,310 _2758 HP15_2759: HP15_2759 - conserved hypothetical protein, at 2,913,318 to 2,913,857 _2759 Position (kb) 2912 2913Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2911.402 kb on + strand, within HP15_2756at 2911.426 kb on + strand, within HP15_2756at 2911.470 kb on + strand, within HP15_2756at 2911.513 kb on + strand, within HP15_2756at 2911.527 kb on - strand, within HP15_2756at 2911.555 kb on - strand, within HP15_2756at 2911.565 kb on - strand, within HP15_2756at 2911.583 kb on + strand, within HP15_2756at 2911.601 kb on + strand, within HP15_2756at 2911.638 kb on - strand, within HP15_2756at 2911.663 kb on + strand, within HP15_2756at 2911.670 kb on + strand, within HP15_2756at 2911.671 kb on - strand, within HP15_2756at 2911.671 kb on - strand, within HP15_2756at 2911.671 kb on - strand, within HP15_2756at 2911.723 kb on + strand, within HP15_2756at 2911.730 kb on + strand, within HP15_2756at 2911.921 kb on - strand, within HP15_2756at 2911.949 kb on - strand, within HP15_2756at 2911.987 kb on + strand, within HP15_2756at 2911.987 kb on + strand, within HP15_2756at 2912.059 kb on - strand, within HP15_2756at 2912.097 kb on - strand, within HP15_2756at 2912.097 kb on - strand, within HP15_2756at 2912.104 kb on - strand, within HP15_2756at 2912.159 kb on + strandat 2912.172 kb on - strandat 2912.194 kb on - strandat 2912.195 kb on - strandat 2912.217 kb on - strandat 2912.247 kb on - strandat 2912.256 kb on + strandat 2912.361 kb on + strandat 2912.372 kb on + strandat 2912.372 kb on + strandat 2912.380 kb on - strandat 2912.380 kb on - strandat 2912.380 kb on - strandat 2912.380 kb on - strandat 2912.380 kb on - strandat 2912.429 kb on - strand, within HP15_2757at 2912.454 kb on + strand, within HP15_2757at 2912.497 kb on + strand, within HP15_2757at 2912.505 kb on - strand, within HP15_2757at 2912.505 kb on - strand, within HP15_2757at 2912.535 kb on + strand, within HP15_2757at 2912.741 kb on + strandat 2912.842 kb on - strandat 2912.844 kb on - strandat 2912.937 kb on + strand, within HP15_2758at 2912.998 kb on + strand, within HP15_2758at 2913.060 kb on + strand, within HP15_2758at 2913.235 kb on + strand, within HP15_2758at 2913.293 kb on + strandat 2913.312 kb on - strandat 2913.312 kb on - strandat 2913.332 kb on + strandat 2913.340 kb on - strandat 2913.398 kb on - strand, within HP15_2759at 2913.432 kb on - strand, within HP15_2759at 2913.540 kb on + strand, within HP15_2759at 2913.589 kb on + strand, within HP15_2759

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
remove
2,911,402 + HP15_2756 0.55 -0.6
2,911,426 + HP15_2756 0.56 -0.3
2,911,470 + HP15_2756 0.58 -0.6
2,911,513 + HP15_2756 0.61 +1.8
2,911,527 - HP15_2756 0.61 -0.2
2,911,555 - HP15_2756 0.63 -2.1
2,911,565 - HP15_2756 0.63 -0.4
2,911,583 + HP15_2756 0.64 +0.0
2,911,601 + HP15_2756 0.65 -0.6
2,911,638 - HP15_2756 0.67 +0.7
2,911,663 + HP15_2756 0.68 -2.4
2,911,670 + HP15_2756 0.68 -0.7
2,911,671 - HP15_2756 0.68 +1.2
2,911,671 - HP15_2756 0.68 -1.4
2,911,671 - HP15_2756 0.68 +0.0
2,911,723 + HP15_2756 0.71 +1.8
2,911,730 + HP15_2756 0.71 -0.5
2,911,921 - HP15_2756 0.81 +1.0
2,911,949 - HP15_2756 0.82 +0.4
2,911,987 + HP15_2756 0.84 +0.7
2,911,987 + HP15_2756 0.84 +1.6
2,912,059 - HP15_2756 0.87 -3.1
2,912,097 - HP15_2756 0.89 -0.5
2,912,097 - HP15_2756 0.89 -0.5
2,912,104 - HP15_2756 0.90 -0.1
2,912,159 + +0.2
2,912,172 - +0.2
2,912,194 - +2.3
2,912,195 - +1.0
2,912,217 - +1.9
2,912,247 - +0.7
2,912,256 + +0.4
2,912,361 + -0.4
2,912,372 + -0.6
2,912,372 + -0.6
2,912,380 - -0.6
2,912,380 - -0.8
2,912,380 - -1.0
2,912,380 - -0.6
2,912,380 - +1.7
2,912,429 - HP15_2757 0.12 +2.4
2,912,454 + HP15_2757 0.20 +2.0
2,912,497 + HP15_2757 0.33 +2.0
2,912,505 - HP15_2757 0.36 -0.6
2,912,505 - HP15_2757 0.36 +0.4
2,912,535 + HP15_2757 0.45 +1.9
2,912,741 + -1.7
2,912,842 - +0.6
2,912,844 - -0.9
2,912,937 + HP15_2758 0.20 -0.8
2,912,998 + HP15_2758 0.33 +0.9
2,913,060 + HP15_2758 0.46 +0.7
2,913,235 + HP15_2758 0.84 -1.6
2,913,293 + -0.9
2,913,312 - +2.9
2,913,312 - -1.6
2,913,332 + +0.8
2,913,340 - -0.9
2,913,398 - HP15_2759 0.15 -0.5
2,913,432 - HP15_2759 0.21 +0.8
2,913,540 + HP15_2759 0.41 -0.5
2,913,589 + HP15_2759 0.50 +2.4

Or see this region's nucleotide sequence