Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2756 and HP15_2757 are separated by 74 nucleotides HP15_2757 and HP15_2758 are separated by 133 nucleotides HP15_2758 and HP15_2759 are separated by 7 nucleotides
HP15_2756: HP15_2756 - metallo-beta-lactamase superfamily protein, at 2,910,284 to 2,912,314
_2756
HP15_2757: HP15_2757 - conserved hypothetical protein, at 2,912,389 to 2,912,712
_2757
HP15_2758: HP15_2758 - conserved hypothetical protein, membrane, at 2,912,846 to 2,913,310
_2758
HP15_2759: HP15_2759 - conserved hypothetical protein, at 2,913,318 to 2,913,857
_2759
Position (kb)
2912
2913 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2911.402 kb on + strand, within HP15_2756 at 2911.426 kb on + strand, within HP15_2756 at 2911.470 kb on + strand, within HP15_2756 at 2911.513 kb on + strand, within HP15_2756 at 2911.527 kb on - strand, within HP15_2756 at 2911.555 kb on - strand, within HP15_2756 at 2911.565 kb on - strand, within HP15_2756 at 2911.583 kb on + strand, within HP15_2756 at 2911.601 kb on + strand, within HP15_2756 at 2911.638 kb on - strand, within HP15_2756 at 2911.663 kb on + strand, within HP15_2756 at 2911.670 kb on + strand, within HP15_2756 at 2911.671 kb on - strand, within HP15_2756 at 2911.671 kb on - strand, within HP15_2756 at 2911.671 kb on - strand, within HP15_2756 at 2911.723 kb on + strand, within HP15_2756 at 2911.730 kb on + strand, within HP15_2756 at 2911.921 kb on - strand, within HP15_2756 at 2911.949 kb on - strand, within HP15_2756 at 2911.987 kb on + strand, within HP15_2756 at 2911.987 kb on + strand, within HP15_2756 at 2912.059 kb on - strand, within HP15_2756 at 2912.097 kb on - strand, within HP15_2756 at 2912.097 kb on - strand, within HP15_2756 at 2912.104 kb on - strand, within HP15_2756 at 2912.159 kb on + strand at 2912.172 kb on - strand at 2912.194 kb on - strand at 2912.195 kb on - strand at 2912.217 kb on - strand at 2912.247 kb on - strand at 2912.256 kb on + strand at 2912.361 kb on + strand at 2912.372 kb on + strand at 2912.372 kb on + strand at 2912.380 kb on - strand at 2912.380 kb on - strand at 2912.380 kb on - strand at 2912.380 kb on - strand at 2912.380 kb on - strand at 2912.429 kb on - strand, within HP15_2757 at 2912.454 kb on + strand, within HP15_2757 at 2912.497 kb on + strand, within HP15_2757 at 2912.505 kb on - strand, within HP15_2757 at 2912.505 kb on - strand, within HP15_2757 at 2912.535 kb on + strand, within HP15_2757 at 2912.741 kb on + strand at 2912.842 kb on - strand at 2912.844 kb on - strand at 2912.937 kb on + strand, within HP15_2758 at 2912.998 kb on + strand, within HP15_2758 at 2913.060 kb on + strand, within HP15_2758 at 2913.235 kb on + strand, within HP15_2758 at 2913.293 kb on + strand at 2913.312 kb on - strand at 2913.312 kb on - strand at 2913.332 kb on + strand at 2913.340 kb on - strand at 2913.398 kb on - strand, within HP15_2759 at 2913.432 kb on - strand, within HP15_2759 at 2913.540 kb on + strand, within HP15_2759 at 2913.589 kb on + strand, within HP15_2759
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 2,911,402 + HP15_2756 0.55 -0.6 2,911,426 + HP15_2756 0.56 -0.3 2,911,470 + HP15_2756 0.58 -0.6 2,911,513 + HP15_2756 0.61 +1.8 2,911,527 - HP15_2756 0.61 -0.2 2,911,555 - HP15_2756 0.63 -2.1 2,911,565 - HP15_2756 0.63 -0.4 2,911,583 + HP15_2756 0.64 +0.0 2,911,601 + HP15_2756 0.65 -0.6 2,911,638 - HP15_2756 0.67 +0.7 2,911,663 + HP15_2756 0.68 -2.4 2,911,670 + HP15_2756 0.68 -0.7 2,911,671 - HP15_2756 0.68 +1.2 2,911,671 - HP15_2756 0.68 -1.4 2,911,671 - HP15_2756 0.68 +0.0 2,911,723 + HP15_2756 0.71 +1.8 2,911,730 + HP15_2756 0.71 -0.5 2,911,921 - HP15_2756 0.81 +1.0 2,911,949 - HP15_2756 0.82 +0.4 2,911,987 + HP15_2756 0.84 +0.7 2,911,987 + HP15_2756 0.84 +1.6 2,912,059 - HP15_2756 0.87 -3.1 2,912,097 - HP15_2756 0.89 -0.5 2,912,097 - HP15_2756 0.89 -0.5 2,912,104 - HP15_2756 0.90 -0.1 2,912,159 + +0.2 2,912,172 - +0.2 2,912,194 - +2.3 2,912,195 - +1.0 2,912,217 - +1.9 2,912,247 - +0.7 2,912,256 + +0.4 2,912,361 + -0.4 2,912,372 + -0.6 2,912,372 + -0.6 2,912,380 - -0.6 2,912,380 - -0.8 2,912,380 - -1.0 2,912,380 - -0.6 2,912,380 - +1.7 2,912,429 - HP15_2757 0.12 +2.4 2,912,454 + HP15_2757 0.20 +2.0 2,912,497 + HP15_2757 0.33 +2.0 2,912,505 - HP15_2757 0.36 -0.6 2,912,505 - HP15_2757 0.36 +0.4 2,912,535 + HP15_2757 0.45 +1.9 2,912,741 + -1.7 2,912,842 - +0.6 2,912,844 - -0.9 2,912,937 + HP15_2758 0.20 -0.8 2,912,998 + HP15_2758 0.33 +0.9 2,913,060 + HP15_2758 0.46 +0.7 2,913,235 + HP15_2758 0.84 -1.6 2,913,293 + -0.9 2,913,312 - +2.9 2,913,312 - -1.6 2,913,332 + +0.8 2,913,340 - -0.9 2,913,398 - HP15_2759 0.15 -0.5 2,913,432 - HP15_2759 0.21 +0.8 2,913,540 + HP15_2759 0.41 -0.5 2,913,589 + HP15_2759 0.50 +2.4
Or see this region's nucleotide sequence