Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2599 and HP15_2600 are separated by 14 nucleotides HP15_2600 and HP15_2601 are separated by 19 nucleotides HP15_2601 and HP15_2602 overlap by 1 nucleotides
HP15_2599: HP15_2599 - isopropylmalate isomerase large subunit, at 2,747,560 to 2,748,969
_2599
HP15_2600: HP15_2600 - isopropylmalate isomerase large subunit, at 2,748,984 to 2,749,379
_2600
HP15_2601: HP15_2601 - N-carbamoylsarcosine amidase, at 2,749,399 to 2,749,989
_2601
HP15_2602: HP15_2602 - hydantoin utilization protein B, at 2,749,989 to 2,751,860
_2602
Position (kb)
2749
2750 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2748.427 kb on + strand, within HP15_2599 at 2748.451 kb on - strand, within HP15_2599 at 2748.471 kb on + strand, within HP15_2599 at 2748.597 kb on - strand, within HP15_2599 at 2748.604 kb on + strand, within HP15_2599 at 2748.604 kb on + strand, within HP15_2599 at 2748.604 kb on + strand, within HP15_2599 at 2748.612 kb on - strand, within HP15_2599 at 2748.615 kb on + strand, within HP15_2599 at 2748.623 kb on - strand, within HP15_2599 at 2748.887 kb on + strand at 2748.887 kb on + strand at 2748.887 kb on + strand at 2748.887 kb on + strand at 2748.887 kb on + strand at 2748.895 kb on - strand at 2748.962 kb on - strand at 2748.973 kb on - strand at 2749.114 kb on + strand, within HP15_2600 at 2749.122 kb on - strand, within HP15_2600 at 2749.192 kb on + strand, within HP15_2600 at 2749.430 kb on + strand at 2749.495 kb on + strand, within HP15_2601 at 2749.576 kb on - strand, within HP15_2601 at 2749.638 kb on - strand, within HP15_2601 at 2749.701 kb on + strand, within HP15_2601 at 2749.898 kb on - strand, within HP15_2601 at 2749.997 kb on + strand at 2749.997 kb on + strand at 2749.997 kb on + strand at 2750.005 kb on - strand at 2750.007 kb on + strand at 2750.031 kb on + strand at 2750.084 kb on + strand at 2750.086 kb on + strand at 2750.091 kb on - strand at 2750.094 kb on - strand at 2750.356 kb on - strand, within HP15_2602 at 2750.370 kb on - strand, within HP15_2602 at 2750.419 kb on + strand, within HP15_2602 at 2750.610 kb on + strand, within HP15_2602 at 2750.652 kb on + strand, within HP15_2602 at 2750.819 kb on + strand, within HP15_2602 at 2750.864 kb on + strand, within HP15_2602 at 2750.868 kb on + strand, within HP15_2602 at 2750.868 kb on + strand, within HP15_2602 at 2750.868 kb on + strand, within HP15_2602 at 2750.871 kb on - strand, within HP15_2602 at 2750.918 kb on + strand, within HP15_2602
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 2,748,427 + HP15_2599 0.61 -1.0 2,748,451 - HP15_2599 0.63 -1.0 2,748,471 + HP15_2599 0.65 +0.0 2,748,597 - HP15_2599 0.74 +1.6 2,748,604 + HP15_2599 0.74 +0.8 2,748,604 + HP15_2599 0.74 +0.0 2,748,604 + HP15_2599 0.74 +1.2 2,748,612 - HP15_2599 0.75 -0.6 2,748,615 + HP15_2599 0.75 -2.4 2,748,623 - HP15_2599 0.75 -0.5 2,748,887 + +0.3 2,748,887 + +2.0 2,748,887 + -1.5 2,748,887 + +0.8 2,748,887 + +0.2 2,748,895 - -0.3 2,748,962 - +0.2 2,748,973 - -0.8 2,749,114 + HP15_2600 0.33 -0.5 2,749,122 - HP15_2600 0.35 +1.9 2,749,192 + HP15_2600 0.53 -0.5 2,749,430 + +3.2 2,749,495 + HP15_2601 0.16 +2.4 2,749,576 - HP15_2601 0.30 +0.6 2,749,638 - HP15_2601 0.40 -0.4 2,749,701 + HP15_2601 0.51 +1.1 2,749,898 - HP15_2601 0.84 -0.1 2,749,997 + -1.3 2,749,997 + +0.6 2,749,997 + +0.6 2,750,005 - -1.9 2,750,007 + -0.1 2,750,031 + -1.6 2,750,084 + -0.5 2,750,086 + -1.5 2,750,091 - -0.2 2,750,094 - -0.3 2,750,356 - HP15_2602 0.20 +1.1 2,750,370 - HP15_2602 0.20 +2.2 2,750,419 + HP15_2602 0.23 -1.6 2,750,610 + HP15_2602 0.33 +1.8 2,750,652 + HP15_2602 0.35 -0.2 2,750,819 + HP15_2602 0.44 -1.6 2,750,864 + HP15_2602 0.47 -1.2 2,750,868 + HP15_2602 0.47 -0.5 2,750,868 + HP15_2602 0.47 -0.4 2,750,868 + HP15_2602 0.47 -0.4 2,750,871 - HP15_2602 0.47 -0.5 2,750,918 + HP15_2602 0.50 +0.0
Or see this region's nucleotide sequence