Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_262 and HP15_263 overlap by 1 nucleotides HP15_263 and HP15_264 are separated by 81 nucleotides HP15_264 and HP15_265 overlap by 15 nucleotides
HP15_262: HP15_262 - strictosidine synthase family protein, at 252,138 to 253,223
_262
HP15_263: HP15_263 - thioesterase superfamily protein, at 253,223 to 253,684
_263
HP15_264: HP15_264 - NADPH:quinone reductase and related Zn-dependent oxidoreductase, at 253,766 to 254,749
_264
HP15_265: HP15_265 - sodium/hydrogen exchanger family protein, at 254,735 to 256,612
_265
Position (kb) 253
254
255 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 252.793 kb on - strand, within HP15_262 at 252.909 kb on + strand, within HP15_262 at 252.958 kb on - strand, within HP15_262 at 253.007 kb on - strand, within HP15_262 at 253.068 kb on + strand, within HP15_262 at 253.076 kb on - strand, within HP15_262 at 253.140 kb on + strand at 253.280 kb on - strand, within HP15_263 at 253.526 kb on - strand, within HP15_263 at 253.550 kb on + strand, within HP15_263 at 253.625 kb on + strand, within HP15_263 at 253.676 kb on + strand at 253.705 kb on - strand at 253.819 kb on - strand at 253.908 kb on + strand, within HP15_264 at 253.908 kb on + strand, within HP15_264 at 253.914 kb on + strand, within HP15_264 at 253.922 kb on - strand, within HP15_264 at 254.031 kb on + strand, within HP15_264 at 254.039 kb on - strand, within HP15_264 at 254.054 kb on - strand, within HP15_264 at 254.111 kb on - strand, within HP15_264 at 254.188 kb on - strand, within HP15_264 at 254.257 kb on + strand, within HP15_264 at 254.260 kb on - strand, within HP15_264 at 254.318 kb on + strand, within HP15_264 at 254.318 kb on + strand, within HP15_264 at 254.411 kb on + strand, within HP15_264 at 254.419 kb on + strand, within HP15_264 at 254.427 kb on - strand, within HP15_264 at 254.427 kb on - strand, within HP15_264 at 254.438 kb on + strand, within HP15_264 at 254.446 kb on - strand, within HP15_264 at 254.477 kb on + strand, within HP15_264 at 254.495 kb on + strand, within HP15_264 at 254.512 kb on + strand, within HP15_264 at 254.606 kb on - strand, within HP15_264 at 254.674 kb on + strand at 254.689 kb on + strand at 254.806 kb on - strand at 254.830 kb on - strand at 254.833 kb on + strand at 254.841 kb on - strand at 254.843 kb on + strand at 254.932 kb on + strand, within HP15_265 at 255.011 kb on - strand, within HP15_265 at 255.011 kb on - strand, within HP15_265 at 255.026 kb on + strand, within HP15_265 at 255.034 kb on - strand, within HP15_265 at 255.034 kb on - strand, within HP15_265 at 255.058 kb on + strand, within HP15_265 at 255.125 kb on - strand, within HP15_265 at 255.241 kb on - strand, within HP15_265 at 255.418 kb on - strand, within HP15_265 at 255.418 kb on - strand, within HP15_265 at 255.454 kb on + strand, within HP15_265 at 255.475 kb on + strand, within HP15_265
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 252,793 - HP15_262 0.60 +0.0 252,909 + HP15_262 0.71 -0.5 252,958 - HP15_262 0.76 +0.4 253,007 - HP15_262 0.80 -0.2 253,068 + HP15_262 0.86 +1.0 253,076 - HP15_262 0.86 +0.2 253,140 + +1.5 253,280 - HP15_263 0.12 +1.8 253,526 - HP15_263 0.66 +2.5 253,550 + HP15_263 0.71 +1.4 253,625 + HP15_263 0.87 -0.4 253,676 + +1.1 253,705 - +0.6 253,819 - -0.0 253,908 + HP15_264 0.14 +0.1 253,908 + HP15_264 0.14 +2.1 253,914 + HP15_264 0.15 -0.2 253,922 - HP15_264 0.16 -1.2 254,031 + HP15_264 0.27 -0.0 254,039 - HP15_264 0.28 +0.5 254,054 - HP15_264 0.29 -1.0 254,111 - HP15_264 0.35 +1.8 254,188 - HP15_264 0.43 +2.2 254,257 + HP15_264 0.50 -0.3 254,260 - HP15_264 0.50 +1.3 254,318 + HP15_264 0.56 +0.9 254,318 + HP15_264 0.56 +1.6 254,411 + HP15_264 0.66 +2.0 254,419 + HP15_264 0.66 -0.2 254,427 - HP15_264 0.67 -0.2 254,427 - HP15_264 0.67 -0.7 254,438 + HP15_264 0.68 -0.2 254,446 - HP15_264 0.69 +2.5 254,477 + HP15_264 0.72 +1.0 254,495 + HP15_264 0.74 +2.4 254,512 + HP15_264 0.76 -2.8 254,606 - HP15_264 0.85 -0.9 254,674 + +1.2 254,689 + -2.1 254,806 - +0.5 254,830 - -1.2 254,833 + +1.3 254,841 - +0.3 254,843 + +1.8 254,932 + HP15_265 0.10 +1.0 255,011 - HP15_265 0.15 -1.0 255,011 - HP15_265 0.15 +1.0 255,026 + HP15_265 0.15 -0.6 255,034 - HP15_265 0.16 +0.4 255,034 - HP15_265 0.16 +0.2 255,058 + HP15_265 0.17 +0.8 255,125 - HP15_265 0.21 +0.8 255,241 - HP15_265 0.27 +1.6 255,418 - HP15_265 0.36 +1.6 255,418 - HP15_265 0.36 -0.7 255,454 + HP15_265 0.38 -1.1 255,475 + HP15_265 0.39 -1.0
Or see this region's nucleotide sequence