Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_258 and HP15_259 overlap by 1 nucleotides HP15_259 and HP15_261 are separated by 101 nucleotides HP15_261 and HP15_260 are separated by 18 nucleotides
HP15_258: HP15_258 - phospholipase D/Transphosphatidylase, at 248,343 to 249,773
_258
HP15_259: HP15_259 - AraC-type DNA-binding domain-containing protein, at 249,773 to 250,849
_259
HP15_261: HP15_261 - hypothetical protein, at 250,951 to 251,220
_261
HP15_260: HP15_260 - hydrolase, alpha/beta fold family protein, at 251,239 to 252,036
_260
Position (kb) 249
250
251 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 248.781 kb on - strand, within HP15_258 at 248.796 kb on - strand, within HP15_258 at 248.863 kb on + strand, within HP15_258 at 248.957 kb on - strand, within HP15_258 at 248.990 kb on - strand, within HP15_258 at 249.018 kb on + strand, within HP15_258 at 249.033 kb on + strand, within HP15_258 at 249.033 kb on + strand, within HP15_258 at 249.045 kb on + strand, within HP15_258 at 249.065 kb on + strand, within HP15_258 at 249.268 kb on + strand, within HP15_258 at 249.276 kb on - strand, within HP15_258 at 249.276 kb on - strand, within HP15_258 at 249.286 kb on - strand, within HP15_258 at 249.341 kb on - strand, within HP15_258 at 249.374 kb on - strand, within HP15_258 at 249.381 kb on - strand, within HP15_258 at 249.539 kb on + strand, within HP15_258 at 249.634 kb on - strand at 249.639 kb on - strand at 249.645 kb on + strand at 249.734 kb on - strand at 249.744 kb on - strand at 249.808 kb on + strand at 249.860 kb on - strand at 249.885 kb on + strand, within HP15_259 at 249.885 kb on + strand, within HP15_259 at 249.946 kb on + strand, within HP15_259 at 249.954 kb on - strand, within HP15_259 at 250.006 kb on - strand, within HP15_259 at 250.033 kb on - strand, within HP15_259 at 250.052 kb on - strand, within HP15_259 at 250.057 kb on + strand, within HP15_259 at 250.161 kb on + strand, within HP15_259 at 250.190 kb on - strand, within HP15_259 at 250.397 kb on + strand, within HP15_259 at 250.405 kb on - strand, within HP15_259 at 250.528 kb on + strand, within HP15_259 at 250.554 kb on - strand, within HP15_259 at 250.808 kb on + strand at 250.813 kb on + strand at 250.816 kb on - strand at 250.816 kb on - strand at 250.831 kb on - strand at 250.876 kb on - strand at 250.911 kb on + strand at 251.187 kb on + strand, within HP15_261 at 251.195 kb on - strand at 251.210 kb on + strand at 251.235 kb on + strand at 251.311 kb on + strand at 251.322 kb on + strand, within HP15_260 at 251.575 kb on - strand, within HP15_260 at 251.605 kb on + strand, within HP15_260 at 251.624 kb on + strand, within HP15_260 at 251.629 kb on + strand, within HP15_260 at 251.637 kb on - strand, within HP15_260 at 251.670 kb on + strand, within HP15_260 at 251.832 kb on + strand, within HP15_260 at 251.832 kb on + strand, within HP15_260
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 248,781 - HP15_258 0.31 -1.4 248,796 - HP15_258 0.32 -1.3 248,863 + HP15_258 0.36 +1.7 248,957 - HP15_258 0.43 +0.2 248,990 - HP15_258 0.45 +2.1 249,018 + HP15_258 0.47 -0.8 249,033 + HP15_258 0.48 -2.7 249,033 + HP15_258 0.48 +0.8 249,045 + HP15_258 0.49 -0.7 249,065 + HP15_258 0.50 +1.9 249,268 + HP15_258 0.65 +0.4 249,276 - HP15_258 0.65 -0.7 249,276 - HP15_258 0.65 -0.2 249,286 - HP15_258 0.66 +1.8 249,341 - HP15_258 0.70 -0.0 249,374 - HP15_258 0.72 -0.7 249,381 - HP15_258 0.73 +2.2 249,539 + HP15_258 0.84 -0.1 249,634 - -0.2 249,639 - -1.3 249,645 + -0.1 249,734 - -0.8 249,744 - +0.8 249,808 + +0.0 249,860 - -0.5 249,885 + HP15_259 0.10 -0.4 249,885 + HP15_259 0.10 -1.0 249,946 + HP15_259 0.16 -0.1 249,954 - HP15_259 0.17 -0.7 250,006 - HP15_259 0.22 +2.0 250,033 - HP15_259 0.24 +1.5 250,052 - HP15_259 0.26 +0.2 250,057 + HP15_259 0.26 +2.1 250,161 + HP15_259 0.36 +1.8 250,190 - HP15_259 0.39 +0.6 250,397 + HP15_259 0.58 +2.6 250,405 - HP15_259 0.59 +2.8 250,528 + HP15_259 0.70 -0.4 250,554 - HP15_259 0.73 +2.4 250,808 + -1.8 250,813 + +2.1 250,816 - +1.2 250,816 - -0.2 250,831 - +0.7 250,876 - +0.5 250,911 + +1.3 251,187 + HP15_261 0.87 -0.8 251,195 - -0.7 251,210 + -1.2 251,235 + +0.2 251,311 + -1.4 251,322 + HP15_260 0.10 -0.7 251,575 - HP15_260 0.42 +1.6 251,605 + HP15_260 0.46 -0.7 251,624 + HP15_260 0.48 -0.1 251,629 + HP15_260 0.49 -1.4 251,637 - HP15_260 0.50 -0.1 251,670 + HP15_260 0.54 -0.4 251,832 + HP15_260 0.74 +0.6 251,832 + HP15_260 0.74 -0.7
Or see this region's nucleotide sequence