Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2522 and HP15_2523 are separated by 35 nucleotides HP15_2523 and HP15_2524 are separated by 67 nucleotides HP15_2524 and HP15_2525 are separated by 399 nucleotides
HP15_2522: HP15_2522 - methyl-accepting chemotaxis sensory transducer, at 2,663,035 to 2,664,672
_2522
HP15_2523: HP15_2523 - hypothetical protein, at 2,664,708 to 2,665,289
_2523
HP15_2524: HP15_2524 - inner membrane protein, at 2,665,357 to 2,665,902
_2524
HP15_2525: HP15_2525 - EAL domain protein, at 2,666,302 to 2,667,714
_2525
Position (kb)
2665
2666 Strain fitness (log2 ratio)
-1
0
1
2 at 2664.441 kb on + strand, within HP15_2522 at 2664.478 kb on - strand, within HP15_2522 at 2664.488 kb on - strand, within HP15_2522 at 2664.516 kb on + strand at 2664.516 kb on + strand at 2664.545 kb on + strand at 2664.568 kb on + strand at 2664.680 kb on + strand at 2664.901 kb on - strand, within HP15_2523 at 2664.910 kb on - strand, within HP15_2523 at 2665.450 kb on + strand, within HP15_2524 at 2665.484 kb on + strand, within HP15_2524 at 2665.585 kb on + strand, within HP15_2524 at 2665.641 kb on + strand, within HP15_2524 at 2665.752 kb on + strand, within HP15_2524 at 2665.811 kb on + strand, within HP15_2524 at 2665.927 kb on - strand at 2665.927 kb on - strand at 2666.101 kb on + strand at 2666.105 kb on + strand at 2666.136 kb on - strand at 2666.250 kb on + strand at 2666.478 kb on - strand, within HP15_2525 at 2666.596 kb on + strand, within HP15_2525 at 2666.609 kb on - strand, within HP15_2525 at 2666.757 kb on + strand, within HP15_2525 at 2666.784 kb on - strand, within HP15_2525
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 2,664,441 + HP15_2522 0.86 -0.2 2,664,478 - HP15_2522 0.88 -0.2 2,664,488 - HP15_2522 0.89 +1.8 2,664,516 + +0.6 2,664,516 + +1.6 2,664,545 + +0.5 2,664,568 + -0.2 2,664,680 + +1.1 2,664,901 - HP15_2523 0.33 -1.6 2,664,910 - HP15_2523 0.35 +1.2 2,665,450 + HP15_2524 0.17 +2.1 2,665,484 + HP15_2524 0.23 -0.9 2,665,585 + HP15_2524 0.42 -0.2 2,665,641 + HP15_2524 0.52 +0.5 2,665,752 + HP15_2524 0.72 +1.5 2,665,811 + HP15_2524 0.83 +1.6 2,665,927 - -0.4 2,665,927 - -1.1 2,666,101 + -0.1 2,666,105 + -0.6 2,666,136 - -0.8 2,666,250 + +1.9 2,666,478 - HP15_2525 0.12 +1.4 2,666,596 + HP15_2525 0.21 +1.8 2,666,609 - HP15_2525 0.22 +1.1 2,666,757 + HP15_2525 0.32 +2.1 2,666,784 - HP15_2525 0.34 +1.3
Or see this region's nucleotide sequence