Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2508 and HP15_2509 are separated by 161 nucleotides HP15_2509 and HP15_2510 overlap by 26 nucleotides HP15_2510 and HP15_2511 are separated by 174 nucleotides
HP15_2508: HP15_2508 - OmpA/MotB domain protein, at 2,649,096 to 2,649,836
_2508
HP15_2509: HP15_2509 - hypothetical protein, at 2,649,998 to 2,650,111
_2509
HP15_2510: HP15_2510 - flagellar motor protein MotA, at 2,650,086 to 2,650,937
_2510
HP15_2511: HP15_2511 - phosphatidylserine decarboxylase proenzyme, at 2,651,112 to 2,651,966
_2511
Position (kb)
2650
2651 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2649.311 kb on - strand, within HP15_2508 at 2649.339 kb on - strand, within HP15_2508 at 2649.368 kb on + strand, within HP15_2508 at 2649.403 kb on + strand, within HP15_2508 at 2649.474 kb on - strand, within HP15_2508 at 2649.487 kb on - strand, within HP15_2508 at 2649.514 kb on + strand, within HP15_2508 at 2649.577 kb on + strand, within HP15_2508 at 2649.602 kb on - strand, within HP15_2508 at 2649.649 kb on + strand, within HP15_2508 at 2649.667 kb on + strand, within HP15_2508 at 2649.667 kb on + strand, within HP15_2508 at 2649.733 kb on - strand, within HP15_2508 at 2649.830 kb on + strand at 2650.068 kb on + strand, within HP15_2509 at 2650.076 kb on - strand, within HP15_2509 at 2650.221 kb on + strand, within HP15_2510 at 2650.284 kb on + strand, within HP15_2510 at 2650.325 kb on - strand, within HP15_2510 at 2650.468 kb on - strand, within HP15_2510 at 2650.556 kb on - strand, within HP15_2510 at 2650.602 kb on - strand, within HP15_2510 at 2650.687 kb on + strand, within HP15_2510 at 2650.809 kb on + strand, within HP15_2510 at 2650.809 kb on + strand, within HP15_2510 at 2650.817 kb on - strand, within HP15_2510 at 2650.880 kb on + strand at 2650.905 kb on - strand at 2650.937 kb on - strand at 2651.031 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 2,649,311 - HP15_2508 0.29 +1.9 2,649,339 - HP15_2508 0.33 -0.2 2,649,368 + HP15_2508 0.37 +3.3 2,649,403 + HP15_2508 0.41 +2.0 2,649,474 - HP15_2508 0.51 +1.7 2,649,487 - HP15_2508 0.53 +1.8 2,649,514 + HP15_2508 0.56 +1.4 2,649,577 + HP15_2508 0.65 +1.9 2,649,602 - HP15_2508 0.68 +1.8 2,649,649 + HP15_2508 0.75 +1.5 2,649,667 + HP15_2508 0.77 +2.9 2,649,667 + HP15_2508 0.77 +2.6 2,649,733 - HP15_2508 0.86 +1.4 2,649,830 + +2.1 2,650,068 + HP15_2509 0.61 +1.8 2,650,076 - HP15_2509 0.68 +2.1 2,650,221 + HP15_2510 0.16 +3.1 2,650,284 + HP15_2510 0.23 +1.8 2,650,325 - HP15_2510 0.28 +2.2 2,650,468 - HP15_2510 0.45 +1.7 2,650,556 - HP15_2510 0.55 +1.9 2,650,602 - HP15_2510 0.61 +2.3 2,650,687 + HP15_2510 0.71 -0.4 2,650,809 + HP15_2510 0.85 +1.1 2,650,809 + HP15_2510 0.85 +0.5 2,650,817 - HP15_2510 0.86 +1.3 2,650,880 + +1.1 2,650,905 - +2.2 2,650,937 - +2.6 2,651,031 - -0.7
Or see this region's nucleotide sequence