Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2502 and HP15_2503 are separated by 38 nucleotides HP15_2503 and HP15_2504 are separated by 5 nucleotides HP15_2504 and HP15_2505 are separated by 201 nucleotides
HP15_2502: HP15_2502 - N-acetylmuramoyl-L-alanine amidase-like protein, at 2,642,563 to 2,643,921
_2502
HP15_2503: HP15_2503 - protein containing uncharacterized protein family UPF0079, ATPase bacteria domains, at 2,643,960 to 2,644,448
_2503
HP15_2504: HP15_2504 - carbohydrate kinase, YjeF related protein, at 2,644,454 to 2,645,953
_2504
HP15_2505: HP15_2505 - iron-sulfur cluster binding protein, at 2,646,155 to 2,647,234
_2505
Position (kb)
2644
2645
2646 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2643.906 kb on + strand at 2644.452 kb on + strand at 2644.551 kb on - strand at 2644.625 kb on - strand, within HP15_2504 at 2644.877 kb on + strand, within HP15_2504 at 2645.138 kb on + strand, within HP15_2504 at 2645.177 kb on - strand, within HP15_2504 at 2645.271 kb on - strand, within HP15_2504 at 2645.384 kb on + strand, within HP15_2504 at 2645.387 kb on - strand, within HP15_2504 at 2645.409 kb on - strand, within HP15_2504 at 2645.424 kb on - strand, within HP15_2504 at 2645.444 kb on + strand, within HP15_2504 at 2645.461 kb on - strand, within HP15_2504 at 2645.474 kb on - strand, within HP15_2504 at 2645.575 kb on + strand, within HP15_2504 at 2645.583 kb on - strand, within HP15_2504 at 2645.665 kb on + strand, within HP15_2504 at 2645.673 kb on - strand, within HP15_2504 at 2645.752 kb on + strand, within HP15_2504 at 2645.833 kb on - strand at 2645.833 kb on - strand at 2645.838 kb on - strand at 2645.961 kb on + strand at 2646.004 kb on + strand at 2646.086 kb on + strand at 2646.117 kb on + strand at 2646.130 kb on - strand at 2646.170 kb on - strand at 2646.275 kb on + strand, within HP15_2505 at 2646.359 kb on + strand, within HP15_2505 at 2646.397 kb on + strand, within HP15_2505 at 2646.405 kb on - strand, within HP15_2505 at 2646.478 kb on + strand, within HP15_2505 at 2646.483 kb on + strand, within HP15_2505 at 2646.619 kb on + strand, within HP15_2505 at 2646.623 kb on - strand, within HP15_2505 at 2646.640 kb on - strand, within HP15_2505 at 2646.640 kb on - strand, within HP15_2505 at 2646.739 kb on - strand, within HP15_2505 at 2646.765 kb on + strand, within HP15_2505 at 2646.765 kb on + strand, within HP15_2505 at 2646.774 kb on + strand, within HP15_2505 at 2646.782 kb on - strand, within HP15_2505 at 2646.782 kb on - strand, within HP15_2505 at 2646.782 kb on - strand, within HP15_2505 at 2646.782 kb on - strand, within HP15_2505 at 2646.865 kb on + strand, within HP15_2505 at 2646.939 kb on - strand, within HP15_2505 at 2646.944 kb on - strand, within HP15_2505
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 2,643,906 + -1.0 2,644,452 + +1.0 2,644,551 - -0.4 2,644,625 - HP15_2504 0.11 +1.4 2,644,877 + HP15_2504 0.28 +0.8 2,645,138 + HP15_2504 0.46 +2.2 2,645,177 - HP15_2504 0.48 +1.8 2,645,271 - HP15_2504 0.54 +0.4 2,645,384 + HP15_2504 0.62 -0.9 2,645,387 - HP15_2504 0.62 -0.9 2,645,409 - HP15_2504 0.64 +0.6 2,645,424 - HP15_2504 0.65 -0.5 2,645,444 + HP15_2504 0.66 +1.2 2,645,461 - HP15_2504 0.67 +0.5 2,645,474 - HP15_2504 0.68 -0.8 2,645,575 + HP15_2504 0.75 +1.6 2,645,583 - HP15_2504 0.75 +2.3 2,645,665 + HP15_2504 0.81 +2.1 2,645,673 - HP15_2504 0.81 +1.7 2,645,752 + HP15_2504 0.87 -0.4 2,645,833 - +1.9 2,645,833 - +0.4 2,645,838 - +2.1 2,645,961 + -0.7 2,646,004 + +0.2 2,646,086 + -0.1 2,646,117 + -3.5 2,646,130 - +0.0 2,646,170 - -1.4 2,646,275 + HP15_2505 0.11 +0.9 2,646,359 + HP15_2505 0.19 +0.9 2,646,397 + HP15_2505 0.22 +1.8 2,646,405 - HP15_2505 0.23 -1.9 2,646,478 + HP15_2505 0.30 -0.8 2,646,483 + HP15_2505 0.30 -0.3 2,646,619 + HP15_2505 0.43 -0.8 2,646,623 - HP15_2505 0.43 -0.6 2,646,640 - HP15_2505 0.45 +0.4 2,646,640 - HP15_2505 0.45 -1.1 2,646,739 - HP15_2505 0.54 -1.2 2,646,765 + HP15_2505 0.56 -0.7 2,646,765 + HP15_2505 0.56 -0.4 2,646,774 + HP15_2505 0.57 -1.4 2,646,782 - HP15_2505 0.58 +2.2 2,646,782 - HP15_2505 0.58 +1.6 2,646,782 - HP15_2505 0.58 -0.6 2,646,782 - HP15_2505 0.58 +1.2 2,646,865 + HP15_2505 0.66 +0.0 2,646,939 - HP15_2505 0.73 -1.8 2,646,944 - HP15_2505 0.73 -0.2
Or see this region's nucleotide sequence