Strain Fitness in Marinobacter adhaerens HP15 around HP15_2427

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2426 and HP15_2427 are separated by 164 nucleotidesHP15_2427 and HP15_2428 are separated by 161 nucleotides HP15_2426: HP15_2426 - NGG1p interacting factor 3, NIF3, at 2,567,289 to 2,568,032 _2426 HP15_2427: HP15_2427 - histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data), at 2,568,197 to 2,569,249 _2427 HP15_2428: HP15_2428 - histidinol dehydrogenase, at 2,569,411 to 2,570,715 _2428 Position (kb) 2568 2569 2570Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2567.327 kb on + strandat 2567.381 kb on - strand, within HP15_2426at 2567.410 kb on + strand, within HP15_2426at 2567.428 kb on - strand, within HP15_2426at 2567.502 kb on + strand, within HP15_2426at 2567.502 kb on + strand, within HP15_2426at 2567.510 kb on - strand, within HP15_2426at 2567.510 kb on - strand, within HP15_2426at 2567.515 kb on - strand, within HP15_2426at 2567.696 kb on + strand, within HP15_2426at 2568.190 kb on - strandat 2568.508 kb on - strand, within HP15_2427at 2568.559 kb on - strand, within HP15_2427at 2568.559 kb on - strand, within HP15_2427at 2568.756 kb on - strand, within HP15_2427at 2569.057 kb on + strand, within HP15_2427at 2569.077 kb on + strand, within HP15_2427at 2569.277 kb on - strandat 2569.400 kb on - strandat 2569.408 kb on + strandat 2570.182 kb on + strand, within HP15_2428

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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2,567,327 + -0.9
2,567,381 - HP15_2426 0.12 +1.4
2,567,410 + HP15_2426 0.16 -1.4
2,567,428 - HP15_2426 0.19 +1.5
2,567,502 + HP15_2426 0.29 +0.3
2,567,502 + HP15_2426 0.29 +0.2
2,567,510 - HP15_2426 0.30 +0.6
2,567,510 - HP15_2426 0.30 -0.9
2,567,515 - HP15_2426 0.30 -2.2
2,567,696 + HP15_2426 0.55 -0.6
2,568,190 - -1.3
2,568,508 - HP15_2427 0.30 -2.9
2,568,559 - HP15_2427 0.34 -3.8
2,568,559 - HP15_2427 0.34 -0.9
2,568,756 - HP15_2427 0.53 -3.6
2,569,057 + HP15_2427 0.82 -1.5
2,569,077 + HP15_2427 0.84 -4.9
2,569,277 - +2.6
2,569,400 - +1.1
2,569,408 + -1.5
2,570,182 + HP15_2428 0.59 -4.6

Or see this region's nucleotide sequence