Strain Fitness in Marinobacter adhaerens HP15 around HP15_2276

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2275 and HP15_2276 are separated by 2 nucleotidesHP15_2276 and HP15_2277 are separated by 3 nucleotides HP15_2275: HP15_2275 - conserved hypothetical protein, secreted, at 2,399,629 to 2,400,813 _2275 HP15_2276: HP15_2276 - conserved hypothetical protein, at 2,400,816 to 2,401,370 _2276 HP15_2277: HP15_2277 - TPR repeat protein, at 2,401,374 to 2,402,516 _2277 Position (kb) 2400 2401 2402Strain fitness (log2 ratio) -2 -1 0 1 2at 2399.861 kb on - strand, within HP15_2275at 2399.968 kb on - strand, within HP15_2275at 2400.010 kb on - strand, within HP15_2275at 2400.010 kb on - strand, within HP15_2275at 2400.022 kb on - strand, within HP15_2275at 2400.285 kb on - strand, within HP15_2275at 2400.332 kb on + strand, within HP15_2275at 2400.374 kb on - strand, within HP15_2275at 2400.374 kb on - strand, within HP15_2275at 2400.453 kb on - strand, within HP15_2275at 2400.498 kb on + strand, within HP15_2275at 2400.597 kb on - strand, within HP15_2275at 2400.597 kb on - strand, within HP15_2275at 2400.610 kb on + strand, within HP15_2275at 2400.629 kb on - strand, within HP15_2275at 2400.830 kb on - strandat 2400.916 kb on + strand, within HP15_2276at 2401.038 kb on - strand, within HP15_2276at 2401.108 kb on - strand, within HP15_2276at 2401.116 kb on - strand, within HP15_2276at 2401.157 kb on + strand, within HP15_2276at 2401.187 kb on - strand, within HP15_2276at 2401.717 kb on - strand, within HP15_2277at 2401.785 kb on + strand, within HP15_2277at 2401.793 kb on - strand, within HP15_2277at 2401.793 kb on - strand, within HP15_2277

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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2,399,861 - HP15_2275 0.20 +2.0
2,399,968 - HP15_2275 0.29 -0.7
2,400,010 - HP15_2275 0.32 +0.4
2,400,010 - HP15_2275 0.32 -0.0
2,400,022 - HP15_2275 0.33 +1.6
2,400,285 - HP15_2275 0.55 -0.9
2,400,332 + HP15_2275 0.59 -0.2
2,400,374 - HP15_2275 0.63 +0.3
2,400,374 - HP15_2275 0.63 -0.4
2,400,453 - HP15_2275 0.70 +0.2
2,400,498 + HP15_2275 0.73 -0.2
2,400,597 - HP15_2275 0.82 +1.2
2,400,597 - HP15_2275 0.82 -0.5
2,400,610 + HP15_2275 0.83 -0.8
2,400,629 - HP15_2275 0.84 -2.2
2,400,830 - -0.0
2,400,916 + HP15_2276 0.18 -0.0
2,401,038 - HP15_2276 0.40 +1.6
2,401,108 - HP15_2276 0.53 -0.0
2,401,116 - HP15_2276 0.54 -1.3
2,401,157 + HP15_2276 0.61 -0.8
2,401,187 - HP15_2276 0.67 -1.5
2,401,717 - HP15_2277 0.30 -1.0
2,401,785 + HP15_2277 0.36 -0.7
2,401,793 - HP15_2277 0.37 -0.7
2,401,793 - HP15_2277 0.37 -1.0

Or see this region's nucleotide sequence